PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010098206.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family B3
Protein Properties Length: 617aa    MW: 69336.1 Da    PI: 9.9565
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010098206.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.27.5e-19223321199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                     f+ v+ ps+vl+++ l +p kfa+e+ ++k+++  ++l+    + W+v++++ +  +++    + +GW++F+++n+L+ gD++vF + ++  e +
  XP_010098206.1 223 FKVVMQPSYVLTNC-LKVPTKFAREYLNDKACK--VKLKV-GENNWDVNYSFgDSAKSWptPRFNNGWRKFCEENNLDIGDVCVFVMAKDsAEIS 313
                     45566677777777.***********8888896..55444.669********644444477999**********************998878888 PP

                     .EEEEE-S CS
              B3  92 lvvkvfrk 99 
                     ++v +fr+
  XP_010098206.1 314 FKVAIFRA 321
                     88888886 PP
2B347.14.4e-15403501197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgr....yvltkGWkeFvkangLkegDfvvFkldgr 87 
                     f+ v+ ps++++++ l +p +fa+ h +kk +++ l+ + ++gr+W  + ++    +    +      l +GW  F+ +n+L++gD+++F+l++ 
  XP_010098206.1 403 FKVVMQPSYTNSNSYLPVPYEFAKIH-IKK-NQVRLVPRIPDGRTWFTENKIrqqkK----GqpktAGLYGGWAAFAVDNNLEVGDVCIFELVKG 491
                     556778899999999********666.444.456788888******99998754333....334559999*********************9976 PP

                     SEE..EEEEE CS
              B3  88 sefelvvkvf 97 
                     +e  l v+++
  XP_010098206.1 492 TEILLQVSIV 501
                     5555666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-20216322IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-24216322IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.366222322IPR003340B3 DNA binding domain
CDDcd100172.89E-19222320No hitNo description
PfamPF023624.7E-16222321IPR003340B3 DNA binding domain
SMARTSM010196.8E-15223322IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-19396502IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-20397502IPR015300DNA-binding pseudobarrel domain
CDDcd100175.55E-17401502No hitNo description
SMARTSM010198.1E-9403504IPR003340B3 DNA binding domain
PROSITE profilePS5086312.337403504IPR003340B3 DNA binding domain
PfamPF023625.7E-13403501IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MSSKMKSEGF DVQAPKGDDE ALDKDIDADW RLSFLNATSA SLSSFLSFTF GSSLLVDVVG  60
LKLKYARNFT STTADSREVH EEIWENSIQG RITGASMQFH METGVEKQRW MFQQSLADYP  120
SNPIQCDEHD QLNNTDVENQ RSKRKEVEEG DFQSPSPSSR PNKRMRTSPS GRHGVPDKGD  180
GEKSTTMRNS KLEVLRGMER LTKNEKSKAL NIASGFKSKN SFFKVVMQPS YVLTNCLKVP  240
TKFAREYLND KACKVKLKVG ENNWDVNYSF GDSAKSWPTP RFNNGWRKFC EENNLDIGDV  300
CVFVMAKDSA EISFKVAIFR ANENANPSLS PAHADGRIQN NETDSDSSDI GCRDGTYIPG  360
TSDSPRARLK PEGTRKHRPP LTAAQKAALL ERSCNFKPKH PFFKVVMQPS YTNSNSYLPV  420
PYEFAKIHIK KNQVRLVPRI PDGRTWFTEN KIRQQKKGQP KTAGLYGGWA AFAVDNNLEV  480
GDVCIFELVK GTEILLQVSI VRLDDDAYRK LCQGSEAATS SAKLKKRVKT TIPGQIGSNP  540
VSTGRPVIEQ CNTTGRPVVC TPVDRTGRPV NLHSGRPYRS TDFHVIRSTA QVDRWNQLRE  600
RSSRKSVPNR DISKRNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1820132327144B3 domain-containing transcription factor VRN1
4i1k_B2e-1820132327144B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010098206.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024022559.10.0B3 domain-containing transcription factor VRN1
TrEMBLW9RV880.0W9RV88_9ROSA; B3 domain-containing transcription factor VRN1
STRINGXP_010098206.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.18e-20related to vernalization1 1