PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010098357.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 295aa    MW: 33638 Da    PI: 8.325
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010098357.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed++l d++k +G+g W+  + + g++R++k+c++rw++yl
   XP_010098357.1 15 KGPWTALEDKILTDYIKTHGKGKWRDLPIKAGLKRCGKSCRLRWLNYL 62
                     79********************************************97 PP
2Myb_DNA-binding52.61.1e-1668112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ ++eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
   XP_010098357.1  68 RGNISEEEEDLIIRLHKLLGNR-WALIAGRLP-GRTDNEIKNYWNTI 112
                      7899******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.2441062IPR017930Myb domain
SuperFamilySSF466891.12E-2813109IPR009057Homeodomain-like
SMARTSM007174.7E-121464IPR001005SANT/Myb domain
PfamPF002492.0E-131562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-221669IPR009057Homeodomain-like
CDDcd001672.12E-81762No hitNo description
PROSITE profilePS5129425.43863117IPR017930Myb domain
SMARTSM007172.0E-1667115IPR001005SANT/Myb domain
PfamPF002492.6E-1568112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2470116IPR009057Homeodomain-like
CDDcd001674.51E-1272113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGRTPCCAKQ DGMNKGPWTA LEDKILTDYI KTHGKGKWRD LPIKAGLKRC GKSCRLRWLN  60
YLRPDIKRGN ISEEEEDLII RLHKLLGNRW ALIAGRLPGR TDNEIKNYWN TILQKKRKGS  120
SIKRSNQPSS NYELDHERKK LQNNTKPAHS QSITQAIIST NTKTPTVQRT SAVQTEALKH  180
CTNINQVLVS AHPTASVASV QPLRVDEFSQ PTKSALENHP YTELDENPTV RPMENTNNVS  240
STTNCDDEEG SFLEKLQCFD FDLDFWELCN VDQFKINGVD DHDNCDRGVL MEKTM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-281311625127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010098357.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010098357.10.0transcription factor WER
TrEMBLW9RF570.0W9RF57_9ROSA; Anthocyanin regulatory C1 protein
STRINGXP_010098357.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.15e-60myb domain protein 3