PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010098362.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 201aa    MW: 23300.6 Da    PI: 9.942
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010098362.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.68.2e-201663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd++l+++++++G++ Wk+ a++ g++R++k+c++rw +yl
   XP_010098362.1 16 RGAWTAEEDQKLAQVIELHGPRKWKSLAAKAGLNRCGKSCRLRWMNYL 63
                     89********************************************97 PP
2Myb_DNA-binding50.25.9e-1669114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
   XP_010098362.1  69 RGNISHQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 114
                      78999*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.3771167IPR017930Myb domain
SMARTSM007171.2E-151565IPR001005SANT/Myb domain
SuperFamilySSF466891.91E-2915110IPR009057Homeodomain-like
PfamPF002491.5E-181663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-241770IPR009057Homeodomain-like
CDDcd001677.45E-111863No hitNo description
SMARTSM007171.3E-1468116IPR001005SANT/Myb domain
PROSITE profilePS5129419.65868118IPR017930Myb domain
PfamPF002491.9E-1469114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-2571119IPR009057Homeodomain-like
CDDcd001671.68E-973114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MPMEKSSQRP KKENNRGAWT AEEDQKLAQV IELHGPRKWK SLAAKAGLNR CGKSCRLRWM  60
NYLRPNIKRG NISHQEEDLI LRLHKLLGNR WSLIAGRLPG RTDNEIKNYW NSHLGKKMKQ  120
MERQNRSLTA LESKLPENTK VVIKQVDEPK GSEEGTSKGI SKEITPNSSF LGDEIFAYYS  180
SEEPLNLEWM GNFLEMDESW F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-28161184105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010098362.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010098362.11e-147transcription factor WER
TrEMBLW9RF621e-146W9RF62_9ROSA; Transcription factor WER
STRINGXP_010098362.11e-147(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21483288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.16e-56myb domain protein 66