PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010098443.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HD-ZIP
Protein Properties Length: 197aa    MW: 23222 Da    PI: 7.1971
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010098443.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.37.5e-202479156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++ t++tk+q++ Le+ F +nr++  e++++LA++lg++ rqV vW+qN+Ra+++
  XP_010098443.1 24 KKSSTRLTKDQVRLLERSFISNRNLEPERKARLAEELGIPPRQVAVWYQNKRARWR 79
                    677899*************************************************9 PP
2HD-ZIP_I/II106.22.5e-3428117493
     HD-ZIP_I/II   4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      rl+k+qv+lLE+sF ++++LeperK++la+eLg+ prqvavW+qn+RAR++t+ lE d+ +L+ ++++  +e+++Le+ev++Lr el++
  XP_010098443.1  28 TRLTKDQVRLLERSFISNRNLEPERKARLAEELGIPPRQVAVWYQNKRARWRTQSLELDCGTLQVRLENALAEKRQLEREVDRLRGELQK 117
                     59***********************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.1E-191382IPR009057Homeodomain-like
PROSITE profilePS5007117.5562181IPR001356Homeobox domain
SMARTSM003896.7E-182385IPR001356Homeobox domain
PfamPF000462.9E-172479IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.4E-202684IPR009057Homeodomain-like
CDDcd000866.39E-152882No hitNo description
PRINTSPR000312.8E-55261IPR000047Helix-turn-helix motif
PROSITE patternPS0002705679IPR017970Homeobox, conserved site
PRINTSPR000312.8E-56177IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MDLFQSQNNK ISSLKHNNKN NKKKKSSTRL TKDQVRLLER SFISNRNLEP ERKARLAEEL  60
GIPPRQVAVW YQNKRARWRT QSLELDCGTL QVRLENALAE KRQLEREVDR LRGELQKAKE  120
MLDQFATTTT TTTTICSIDS SWCEEGIRSS TGYYNNYQDQ DHDHDHVMID HDQVLQLDYE  180
LFPHLMGTDY DRVVHDL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15056ERKARLA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010098443.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010098443.11e-147homeobox-leucine zipper protein ATHB-52
SwissprotQ9FN295e-28ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52
TrEMBLW9RW211e-145W9RW21_9ROSA; Homeobox-leucine zipper protein ATHB-52
STRINGXP_010098443.11e-146(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110112239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.12e-29homeobox protein 52