PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010098482.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

LBD

Protein Properties

Length: 183aa MW: 19561.1 Da PI: 8.3747

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010098482.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	145.5	1.5e-45	18	117	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca+dCv++pyfpa++p+kfanvhk+FGasnv+k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+a+la XP_010098482.1 18 PCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHKVFGASNVSKMLQELPLHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLA 112 7********************************************************************************************** PP DUF260 96 llkee 100 l+++e XP_010098482.1 113 LAQAE 117 99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.408	17	118	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.2E-45	18	115	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MKDNNSGSGS RKQGAPSPCA ACKLLRRRCA QDCVFSPYFP ADEPQKFANV HKVFGASNVS 60 KMLQELPLHQ RGDAVSSMVY EANARVRDPV YGCVGAISSL QQQIDVLQAQ LALAQAEVVH 120 LRVRQSAPLS NHGLSPASPS NSGSPSSKFV GSQAKPIFDM DMTVDQSTYG ETCGHAGLIS 180 GFY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-50	14	119	7	112	LOB family transfactor Ramosa2.1
5ly0_B	8e-50	14	119	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010098482.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010098482.1	1e-134	LOB domain-containing protein 4
Swissprot	Q9SHE9	5e-75	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	W9R7L5	1e-132	W9R7L5_9ROSA; Uncharacterized protein
STRING	XP_010098482.1	1e-133	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1334	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-66	LOB domain-containing protein 4

Link Out ? help Back to Top
Entrez Gene	21408597