PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010098663.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

ZF-HD

Protein Properties

Length: 258aa MW: 27550.4 Da PI: 7.2417

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010098663.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	103.5	1.4e-32	58	113	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +vrY+eClkNhA+++GghavDGC+Efm++ geegt++alkCaAC+CHRnFHR+e ++ XP_010098663.1 58 GVRYRECLKNHAVNIGGHAVDGCCEFMAA-GEEGTIDALKCAACNCHRNFHRKEISD 113 69************************9.999******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	4.0E-22	59	110	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.1E-29	59	111	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.1E-28	60	111	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.715	61	110	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	5.66E-22	181	256	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.9E-33	182	257	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.1E-25	195	251	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MEFDEHDDPD EEMEIPTVLP PGYDSSSAAA AARTINKSEV VGGGGGGASS NSRKNSGGVR 60 YRECLKNHAV NIGGHAVDGC CEFMAAGEEG TIDALKCAAC NCHRNFHRKE ISDSSSPGAA 120 AAASDHPNYL YHHHHHQNFP GGYYRSPPPP SGYLHVRPLA LPGVCGGGRE EGEDHMSNPS 180 SSGGGGGGGG GSSSKKRFRT KFTQEQKEKM LAFAESVGWR IQKHDEAAVE QFCAETGVRR 240 PVLKVWMHNN KHTLGKKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-30	194	253	16	75	ZF-HD homeobox family protein
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	181	191	SGGGGGGGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010098663.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010098663.1	0.0	zinc-finger homeodomain protein 2
Swissprot	A2Z259	7e-76	ZHD1_ORYSI; Zinc-finger homeodomain protein 1
Swissprot	Q6YXH5	7e-76	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	W9R7V3	0.0	W9R7V3_9ROSA; Uncharacterized protein
STRING	XP_010098663.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	7e-66	homeobox protein 22

Link Out ? help Back to Top
Entrez Gene	21408711

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]