PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010098805.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 252aa    MW: 29232.2 Da    PI: 4.7511
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010098805.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-161865148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W +eEde+l+  v++lG ++W++ a+  g++R++k+c++rw++yl
   XP_010098805.1 18 KGTWLEEEDERLISFVQLLGERRWDSLAKASGLKRSGKSCRLRWLNYL 65
                     799*******************************************97 PP
2Myb_DNA-binding506.9e-1675116548
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      + eE+ +++++++++G++ W++Iar+++ gRt++++k++w+++l
   XP_010098805.1  75 SIEEENIILELHERWGNK-WSKIARRFP-GRTDNEIKNYWRTHL 116
                      569***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.2361365IPR017930Myb domain
SuperFamilySSF466895.75E-2716112IPR009057Homeodomain-like
SMARTSM007171.1E-131767IPR001005SANT/Myb domain
PfamPF002495.3E-151865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-201972IPR009057Homeodomain-like
CDDcd001677.31E-92065No hitNo description
PROSITE profilePS5129425.93366120IPR017930Myb domain
SMARTSM007173.1E-1370118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-2473120IPR009057Homeodomain-like
PfamPF002492.3E-1475116IPR001005SANT/Myb domain
CDDcd001672.51E-1077116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAYQEIAMQR EEGEELRKGT WLEEEDERLI SFVQLLGERR WDSLAKASGL KRSGKSCRLR  60
WLNYLRPNLK HGQISIEEEN IILELHERWG NKWSKIARRF PGRTDNEIKN YWRTHLRKKL  120
AQGQEGKSQY ELEKAKGDFL FETKNESSVP KSTCESSTHG DHGSVEDLWG SCSWDNSSEA  180
SGMSSADFAL TSSPYENRLS DWISEYSNDI QSEMNYQNDS ISIESASSYL ECWTAPDYSY  240
TWDCSGSLWD MT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-27151201105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-26912049159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-26912049159MYB PROTO-ONCOGENE PROTEIN
1h8a_C7e-27912018128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010098805.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024935270.12e-90transcription factor MYB27-like isoform X2
SwissprotQ9SCP14e-67MYB27_ARATH; Transcription factor MYB27
TrEMBLW9R8B80.0W9R8B8_9ROSA; Myb-related protein MYBAS1
STRINGXP_010098805.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131692631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.15e-62myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]