PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010098999.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

bHLH

Protein Properties

Length: 121aa MW: 14032.6 Da PI: 9.7215

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010098999.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.4	0.0003	95	115	9	29
HHHHHHHHHHHHHHHHCTSCC CS HLH 9 ErrRRdriNsafeeLrellPk 29 E+ +++N+ +++Lr++lP+ XP_010098999.1 95 EKDQLRKLNQMIDKLRTHLPP 115 777789**************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MVQNNFVPKT RTVVVLMKLF CANSRVDLGL HLWEYLMGKG YCPHGHALEL LLTGLCSRGF 60 VKEAFECSKQ VLERGRHLSE AAFRLIERRL LQEGEKDQLR KLNQMIDKLR THLPPITEKM 120 L

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010098999.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010099000.2	6e-82	LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g61360
Swissprot	Q9M2C8	1e-33	PP291_ARATH; Pentatricopeptide repeat-containing protein At3g61360
TrEMBL	W9R8Z5	5e-84	W9R8Z5_9ROSA; Uncharacterized protein
STRING	XP_010098999.1	9e-85	(Morus notabilis)

Link Out ? help Back to Top
Entrez Gene	21408345

Publications ? help Back to Top
Lurin C, et al. Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis. Plant Cell, 2004. 16(8): p. 2089-103 [PMID:15269332] Hsieh WY, et al. The SLOW GROWTH3 Pentatricopeptide Repeat Protein Is Required for the Splicing of Mitochondrial NADH Dehydrogenase Subunit7 Intron 2 in Arabidopsis. Plant Physiol., 2015. 168(2): p. 490-501 [PMID:25888618] Hsieh WY,Liao JC,Hsieh MH Dysfunctional mitochondria regulate the size of root apical meristem and leaf development in Arabidopsis. Plant Signal Behav, 2015. 10(10): p. e1071002 [PMID:26237004] Hsieh WY,Lin SC,Hsieh MH Transformation of nad7 into the nuclear genome rescues the slow growth3 mutant in Arabidopsis. RNA Biol, 2018. 15(11): p. 1385-1391 [PMID:30422048]