PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010099056.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C3H
Protein Properties Length: 416aa    MW: 45956.4 Da    PI: 8.0236
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010099056.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH222.9e-0799120426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       C+ ++  G C +GdrC++ H+
  XP_010099056.1  99 TVCKSWLN-GSCARGDRCSYLHS 120
                     68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-52050IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.7422249IPR000571Zinc finger, CCCH-type
SMARTSM003562.32248IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-42350IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-795120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.56895122IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-696121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-698116IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-598120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.106.8E-21117258IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003206.5E-6126165IPR001680WD40 repeat
SuperFamilySSF509788.55E-50127415IPR017986WD40-repeat-containing domain
PfamPF004000.0023129165IPR001680WD40 repeat
PROSITE profilePS5029421.911133416IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.616133174IPR001680WD40 repeat
PRINTSPR003204.7E-8152166IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780152166IPR019775WD40 repeat, conserved site
SMARTSM0032035205242IPR001680WD40 repeat
SMARTSM003202.2E-7250287IPR001680WD40 repeat
PfamPF004002.5E-6252287IPR001680WD40 repeat
PROSITE profilePS5008213.382257296IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.2E-30259415IPR015943WD40/YVTN repeat-like-containing domain
PRINTSPR003204.7E-8274288IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780274288IPR019775WD40 repeat, conserved site
SMARTSM003204.8E-6290327IPR001680WD40 repeat
PfamPF004008.1E-5292326IPR001680WD40 repeat
PROSITE profilePS500829.372297336IPR001680WD40 repeat
PRINTSPR003204.7E-8314328IPR020472G-protein beta WD-40 repeat
SMARTSM0032033333374IPR001680WD40 repeat
SMARTSM00320370377414IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MEVFKSKSSA RTSSSSGTTI STVKVRVCWY WFLGTCDRYQ HCQFLHSLPE KADLSKISFS  60
AWKDGEEQRH QSAADHKATT VTSKRFPSII SIEKKKRKTV CKSWLNGSCA RGDRCSYLHS  120
WFYGEGFSKL STLHGHNMGV KGITLTSSMD KLYSASRDGT LRLWDCQNGQ CSRVIKLAGE  180
ISSLISEGPW IFVGLTNVVK VWNTQNDAEF SLDGPVGQVQ SMVVANNMLF AGAQNGQIFA  240
WRGSSETNNP FQPLTCLVGH SDAVTCLAVG GKRLFSGSVD NTIRVWDLDT LQCVAILKGH  300
KDMVMSLICW DQYLLSCSED GTIKVWATSQ AGNIEVIYTH NEQHGALALC GIMDAMGKPI  360
LLCSCSDNSV RLYELPSFAE SGRLFGKEEV WTIQNGPQGL FFTAEAQGLI TVWKMA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-201094156322Tako8
6g6n_A1e-201094156322Tako8
6g6n_B1e-201094156322Tako8
6g6n_C1e-201094156322Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010099056.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010099056.10.0zinc finger CCCH domain-containing protein 48
TrEMBLW9RJL20.0W9RJL2_9ROSA; Zinc finger CCCH domain-containing protein 48
STRINGXP_010099056.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF231645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-140zinc finger WD40 repeat protein 1