PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010099058.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HB-PHD
Protein Properties Length: 1031aa    MW: 114415 Da    PI: 4.6872
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010099058.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox40.54.5e-138639091056
                     HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++L + F++n+y++++++e LA++lgLt  qV+ WF N R  ++
  XP_010099058.1 863 AVTQRLYQSFKENQYLDRATKESLAQELGLTSYQVSKWFENARWSYR 909
                     56899**************************************9887 PP
2PHD37.94.1e-13487542151
                     SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
             PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                     +C+ Cg+    ++++++lCdg C++ fH+ Cl+++l se++p +   wlC+ C++k
  XP_010099058.1 487 FCAKCGSkdMSANNDIILCDGaCDRGFHQFCLEPPLLSEDIPPDdeGWLCPGCDCK 542
                     699***976566********66*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.06E-13477545IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.4E-13483542IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.065485542IPR019787Zinc finger, PHD-finger
PfamPF006281.3E-10487542IPR019787Zinc finger, PHD-finger
CDDcd155043.04E-28487539No hitNo description
SMARTSM002491.1E-9487540IPR001965Zinc finger, PHD-type
PROSITE patternPS013590488539IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.605.3E-13842905IPR009057Homeodomain-like
PROSITE profilePS5007113.151851911IPR001356Homeobox domain
SMARTSM003895.0E-12854915IPR001356Homeobox domain
SuperFamilySSF466891.07E-12858912IPR009057Homeodomain-like
CDDcd000863.45E-12858912No hitNo description
PfamPF000461.6E-10863909IPR001356Homeobox domain
PROSITE patternPS000270886909IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1031 aa     Download sequence    Send to blast
MADATHIDIP TEQVNGQTAK CTHPEQNMLE QVKETEPSEH IHISEAQTVE NLRQESSIAA  60
THVFCEQLQP VSDSVAKNSL PEAPGQQNEP LEPIAAVGMC STNKHPESSP RNLTNDSLCN  120
SKELELPQKD AGANGQTEKI SFPKEAAAEV KHGCGSGNLC AEQAGTKNDV DSNLQNEIRK  180
TDITVSSFVF TQKLEIVSEK RSLISGGNLA VPSEDVVRHC QTENSSCPQQ STLGQIKDFD  240
CGCLLGETPK QEDHLGTELV QNVLVETRIA ASNGIVSEHL EPPVGDGSDS YIDKQVEQPS  300
EDVSKSSSLE QLETSSKSLV NKPSQLGRKD KQTSKSRKKQ YMLRSLVHSD RVLRSRTQEK  360
LKSHELSNTL SNIGNGVEKR MKERKKRRGT RVIADEFSRI RKRLKYFFNR IHYEQNLIDA  420
YSSEGWKGTS LEKLKPEKEL QRAKSEIFRR KLKIRDLFQQ LDSLCAEGRF PKSLFDSEGQ  480
IDSEDIFCAK CGSKDMSANN DIILCDGACD RGFHQFCLEP PLLSEDIPPD DEGWLCPGCD  540
CKVDCFDLLN DSYGTNLSVT DSWEKVFPEA AAAAREGKDQ DHNLEFPSDD SEDDDYDPYG  600
PEIVEKVEGD ESSSDESEYT SACDELEGEA PPKDEQYFGL SSDDSEDNDF DPDDQDVDEN  660
AKQESSSSDF TSDSEDLAFT LDEGQIAEKD EVSSLDPTRS LGNAVMQSSK RGGNKSSIKD  720
ELLDILESGT GQDGSPPISG KRHVERLDYK RLHDETYGHL PSDSSDDEDW TDYAAPRKRK  780
RTTGQVSSVS PNENASIIKN QTTTDAANND LEDNEYVPRR RSRQNSVVTD ENNIPNKLLQ  840
GSPKSGSTGR RRELSTNRRL GEAVTQRLYQ SFKENQYLDR ATKESLAQEL GLTSYQVSKW  900
FENARWSYRH SSSKKPGISE HASKESTLSP QTNKKLFETE LNTSITNSTC NGALNNELPR  960
TGNAMPESCS GDVGDGKVEM PTKESSGQTS TTPGSRKTGR PWKVERPETP PVVDTHETGG  1020
RKRGRHRESA S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1383404RKKRRGTRVIADEFSRIRKRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010099058.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010099058.10.0homeobox protein HAT3.1
TrEMBLW9R9470.0W9R947_9ROSA; Homeobox protein
STRINGXP_010099058.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84373141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.15e-99Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain