PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010099251.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 327aa    MW: 37054.5 Da    PI: 6.5082
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010099251.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.31.8e-182370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll+++++++G g+W++ a++ g++Rt+k+c++rw++yl
   XP_010099251.1 23 RGPWTLEEDTLLIHYIARHGEGHWNLLAKRAGLKRTGKSCRLRWLNYL 70
                     89********************************************97 PP
2Myb_DNA-binding52.51.2e-1676119146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_010099251.1  76 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 119
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.8661870IPR017930Myb domain
SuperFamilySSF466895.62E-3121117IPR009057Homeodomain-like
SMARTSM007176.4E-162272IPR001005SANT/Myb domain
PfamPF002492.0E-172370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-232477IPR009057Homeodomain-like
CDDcd001673.29E-122570No hitNo description
PROSITE patternPS0017503847IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129425.75171125IPR017930Myb domain
SMARTSM007172.7E-1575123IPR001005SANT/Myb domain
PfamPF002491.2E-1576119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2378124IPR009057Homeodomain-like
CDDcd001671.14E-1180119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MHSITKRVCH PNNNIEEETE LRRGPWTLEE DTLLIHYIAR HGEGHWNLLA KRAGLKRTGK  60
SCRLRWLNYL KPDIKRGNLT PQEQLLILEL HSKWGNRWSK IAQHLPGRTD NEIKNYWRTR  120
VQKQARQLNI ESNSKRFLEA VRCFWMPRLL QKMEQTSNSS TSTNSSPSTL TTIIPSAQDC  180
ELVPNDFVPP NSTTFPALSD SSSILPNKPI PGSNHSNGCL NYAFTNQNIL STDSIITSLF  240
PQVEEHPKTY TFSNGIEKTD PISGLDHESN SSVHYVDSSS YGFEGLNLDS ILEFEAFDVS  300
GLNCHVAESD WALGDMAADA LWNMGEM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25201254108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010099251.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010099251.10.0transcription factor MYB62
TrEMBLW9RHM90.0W9RHM9_9ROSA; Transcription factor
STRINGXP_010099251.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-83myb domain protein 62