PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010099342.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MIKC_MADS
Protein Properties Length: 251aa    MW: 28034.1 Da    PI: 10.0841
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010099342.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.85.1e-274090151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krie+  nr+vtfskRr g++KKA+ELSvLCd+e+ +i+fs +g+lye+ss
  XP_010099342.1 40 KRIEDRHNRHVTFSKRRVGLMKKANELSVLCDVEIGLIVFSGSGNLYEFSS 90
                    79***********************************************96 PP
2K-box18.58.3e-081822224383
           K-box  43 LesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                     +e+L+ keL ++e +L   l++ R +K++l++e ++ l +k
  XP_010099342.1 182 VEQLTTKELTNIEGNLGALLRETRLRKTQLMMETLSALAEK 222
                     689*******************************9998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.8E-373291IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-2732102IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.9413292IPR002100Transcription factor, MADS-box
CDDcd002654.16E-313399No hitNo description
PROSITE patternPS0035003488IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-263454IPR002100Transcription factor, MADS-box
PfamPF003192.7E-244188IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-265469IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-266990IPR002100Transcription factor, MADS-box
PfamPF014861.1E-5182222IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MRIRRCHMSN PKSPVGKENQ GKVRVCAIGK SMGRGKVSMK RIEDRHNRHV TFSKRRVGLM  60
KKANELSVLC DVEIGLIVFS GSGNLYEFSS SHRLEDLIEE TISKAKGAFV VDRQISDVVL  120
MANQVVEDYQ WGGSLGKTVE RYRTYNEEFA VKTADKPKKS LTDSISGFRS AELLEAMSNL  180
NVEQLTTKEL TNIEGNLGAL LRETRLRKTQ LMMETLSALA EKIGETIGGQ GGSGLNRQND  240
QRRGQELQLI S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-183291160MEF2 CHIMERA
6byy_B1e-183291160MEF2 CHIMERA
6byy_C1e-183291160MEF2 CHIMERA
6byy_D1e-183291160MEF2 CHIMERA
6bz1_A1e-183291160MEF2 CHIMERA
6bz1_B1e-183291160MEF2 CHIMERA
6bz1_C1e-183291160MEF2 CHIMERA
6bz1_D1e-183291160MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010099342.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024023309.11e-144truncated transcription factor CAULIFLOWER A isoform X2
TrEMBLW9R9U00.0W9R9U0_9ROSA; Agamous-like MADS-box protein AGL8
STRINGXP_010099342.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.16e-29AGAMOUS-like 8