PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010099404.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

HD-ZIP

Protein Properties

Length: 315aa MW: 34877.8 Da PI: 8.3095

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010099404.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.7	9.3e-19	166	220	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Lee F+++++++ ++++ LA++l+L rqV vWFqNrRa+ k XP_010099404.1 166 RKKLRLTKDQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 220 788899***********************************************98 PP
2	HD-ZIP_I/II	125	3.4e-40	166	255	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+k+q++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l XP_010099404.1 166 RKKLRLTKDQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHKELQELK-AL 255 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.59E-18	158	223	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.524	162	222	IPR001356	Homeobox domain
SMART	SM00389	1.1E-15	164	226	IPR001356	Homeobox domain
Pfam	PF00046	3.6E-16	166	220	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.3E-17	166	220	IPR009057	Homeodomain-like
CDD	cd00086	6.24E-16	166	223	No hit	No description
PROSITE pattern	PS00027	0	197	220	IPR017970	Homeobox, conserved site
Pfam	PF02183	4.6E-10	222	256	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	1.7E-25	222	265	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009735	Biological Process	response to cytokinin
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MGFDHDHVCN TGLVLRLGFS PTTATATATA AKKPSTTTNS SSTPFEPSLL TLGLSGGGDE 60 AHDNNNNNNN SSSNNNNNRK IIDVSKSFHD HHLHQEPVQN NNNSNNNISV HDNSLYRQAS 120 PHSAVSSFSG GRVKRERDLS SEEIEVEEKV SLSRVSDEDE DGTNARKKLR LTKDQSALLE 180 ESFKQHSTLN PKQKQALARQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEF LKKCCETLTD 240 ENRRLHKELQ ELKALKLAQP LYMHMPAATL TMCPSCERIV GGVGGDVVGG SAKSPFSMAP 300 KPHFYNPFTN PSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	214	222	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00477	DAP	Transfer from AT4G37790	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010099404.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010099404.1	0.0	homeobox-leucine zipper protein HAT22
Swissprot	P46604	1e-97	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	W9RI15	0.0	W9RI15_9ROSA; Homeobox-leucine zipper protein HAT22
STRING	XP_010099404.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1144	33	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	4e-81	HD-ZIP family protein

Link Out ? help Back to Top
Entrez Gene	21391159

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]