PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010099411.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 379aa    MW: 41970.7 Da    PI: 6.7317
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010099411.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l+ ++ q G+g +W + ++++g++R++k+c++rw++yl
   XP_010099411.1 14 RGPWSPEEDAKLKAYIDQNGTGgNWIALPQKIGLRRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding36.61e-1169111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
   XP_010099411.1  69 GGFSEEEDNIICSLYLSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.35962IPR017930Myb domain
SuperFamilySSF466891.67E-2511109IPR009057Homeodomain-like
SMARTSM007174.7E-111364IPR001005SANT/Myb domain
PfamPF002493.4E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-231569IPR009057Homeodomain-like
CDDcd001673.66E-81662No hitNo description
PROSITE profilePS5129421.3363117IPR017930Myb domain
SMARTSM007171.6E-1067115IPR001005SANT/Myb domain
PfamPF002491.9E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2370117IPR009057Homeodomain-like
CDDcd001671.09E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAKLKAYID QNGTGGNWIA LPQKIGLRRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYLSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
QCREQAAAQA RRANSLMQGH QLKRSESSTF DHHNNINLPH GSFLNQTAPY WPDLPAVLTV  180
PVATNQSSHV VDVTNISQVL KEDDNAGRHQ ASIKNLLIKL GGRFSETAST DHQFHNGTNY  240
PADQLSAVQD QAYSLDMLST YDAVGPTMYQ GLENLQSELR ELIYSNHPQQ AVLLDGISTN  300
NSDGFCGIME QMFTGSTTTT AATTGTSTTS VDSGSWGEMN SSSLVFATNM VSDYGNYQLP  360
HQDSAFEESR YFETSTTAM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00089SELEXTransfer from AT3G49690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010099411.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010099411.10.0transcription factor RAX3
SwissprotQ9M2Y92e-83RAX3_ARATH; Transcription factor RAX3
TrEMBLW9R9U30.0W9R9U3_9ROSA; Transcription factor RAX3
STRINGXP_010099411.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-84myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]