PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010099606.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family LBD
Protein Properties Length: 208aa    MW: 22356.2 Da    PI: 7.3422
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010099606.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.41.7e-312103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C+l++++     p++q++++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA  r+ +Pv+Gavg++++++++++q+
  XP_010099606.1   2 SCNGCRVLRKGCSDNCMLRQCLqlidnPQAQAHATVFVAKFFGRAGLMSFIAAVPEDQRPALFQSLLYEAVGRTINPVHGAVGLLWTGNWHVCQS 96 
                     6********************************************************************************************** PP

          DUF260  91 kaelall 97 
                     +ae++l+
  XP_010099606.1  97 AAETVLR 103
                     **99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.7491107IPR004883Lateral organ boundaries, LOB
PfamPF031956.2E-272101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDNCMLR QCLQLIDNPQ AQAHATVFVA KFFGRAGLMS FIAAVPEDQR  60
PALFQSLLYE AVGRTINPVH GAVGLLWTGN WHVCQSAAET VLRGGALGPL AESHGGVAAA  120
DQSVDNASEY TVNRFMGRQR SRSRPKRRPF NVEDADDSMS PDLDLCLVAK PRAPSEESET  180
TTLASSSSAD NLDSSLGGGT RTVLRLFI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010099606.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010099606.11e-153LOB domain-containing protein 38
SwissprotQ9SN232e-64LBD38_ARATH; LOB domain-containing protein 38
TrEMBLW9RAF01e-152W9RAF0_9ROSA; Uncharacterized protein
STRINGXP_010099606.11e-153(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.13e-66LOB domain-containing protein 38