PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010099829.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HD-ZIP
Protein Properties Length: 209aa    MW: 24036.2 Da    PI: 7.568
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010099829.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.37e-2052106357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     k++++++eq++ Le  F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  XP_010099829.1  52 KKRKLSSEQVNLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 106
                     56699************************************************95 PP
2HD-ZIP_I/II123.31.2e-3952143293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     kkr+ls+eqv+lLE++F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+ +d+++ e++rLe+ev +L+e++++
  XP_010099829.1  52 KKRKLSSEQVNLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKMHDNVVVEKCRLESEVLQLKEQIMD 143
                     9***************************************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.58447107IPR001356Homeobox domain
SMARTSM003893.1E-1850111IPR001356Homeobox domain
SuperFamilySSF466894.06E-1852115IPR009057Homeodomain-like
CDDcd000865.38E-1652108No hitNo description
PfamPF000463.5E-1752106IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.2E-2154114IPR009057Homeodomain-like
PRINTSPR000311.3E-57887IPR000047Helix-turn-helix motif
PROSITE patternPS00027082105IPR017970Homeobox, conserved site
PRINTSPR000311.3E-587103IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MNNQIDEDHM ALISQLYPGV YTQMVPQQGE AKPRRRRRKN KSGEGGGCAA AKKRKLSSEQ  60
VNLLEMNFGN EHKLESERKD RLASELGLDP RQVAVWFQNR RARWKNKKLE EEYSTLKKMH  120
DNVVVEKCRL ESEVLQLKEQ IMDAKKEIQR LAERAEGVSS NSPSSSLSVE AVEPPFLGEF  180
GVVSEGYDNM FYAAENNYIH GMEWVNLYL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13654RRKNKSGEGGGCAAAKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010099829.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010099829.11e-154homeobox-leucine zipper protein ATHB-40
SwissprotO232081e-87ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLW9RLH11e-153W9RLH1_9ROSA; Homeobox-leucine zipper protein ATHB-40
STRINGXP_010099829.11e-154(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47893257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.15e-83homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]