PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010099836.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GRAS
Protein Properties Length: 557aa    MW: 62023.3 Da    PI: 6.7101
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010099836.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2882.6e-881915562374
            GRAS   2 velLlecAeavssgdlelaqalLarlsel....aspdgd....pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                     ve L+++A++++s++ +laqa+L rl+++     sp g+    ++qR+a yf+ AL++ l++      +  +++ +s+++ ++++ a+k+fs +s
  XP_010099836.1 191 VEDLIRVADCFDSDNSQLAQAILDRLNQRlrsnTSPVGKpvgrALQRAALYFKDALQSLLSG------SNRTARLSSWSEIVQTIRAYKAFSGIS 279
                     689************************987655555555555589*****************......666778888888*************** PP

            GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg....ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                     Pi+ fsh+t+Nqa+lea++g+  +H++Dfdi+ G+Q+++L+++La+++e+    pp +RiT+++++e   + e + ++e+L++fA+ l+++f+++
  XP_010099836.1 280 PIPMFSHFTTNQALLEALNGSAFIHVVDFDIGLGGQYASLMKELAEKSESlrlsPPVVRITAIVPEE--YAVESRLIRENLSQFAQDLKIRFQIE 372
                     ************************************************555555***********66..99999********************* PP

            GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe...adh.nsesFlerflealeyysalfds 270
                     +++ +++e l+++++++ +gE++aV l+ +  r l    s++     +L  v+++sP vvv+v+ e    +   ++sF + f+  le+ys++++s
  XP_010099836.1 373 FVLFRTFEVLSFKAIKFMEGEKTAVLLSTAALRRL----SVAG----FLTDVRRISPAVVVLVDAEglgEEVgATTSFRRSFVCGLEFYSMVMES 459
                     ****************************9999998....5555....*******************6643445677******************* PP

            GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                     l+a +    ++ +k+E ++l+++   +v ++  +      + +  re+++ aG++pv ls++a  qa++ll kv+++g++v +++++lvl+W+dr
  XP_010099836.1 460 LDAAM-VGGDWVRKIETFVLRPRMAAAVEAAAGR------KTAPFREMFHGAGMRPVLLSQFADFQAECLLGKVQVRGFHVAKRQAELVLCWHDR 547
                     *9886.5668999**************9988876......67899************************************************** PP

            GRAS 366 pLvsvSaWr 374
                     +Lv++S+Wr
  XP_010099836.1 548 ALVATSVWR 556
                     ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.729164536IPR005202Transcription factor GRAS
PfamPF035149.1E-86191556IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MIVPVTSPQN NPNPKSDNLN NNGNNNNNNN STTAANIIGF HSPTHIPNLC YEPTSVLDLR  60
RSPSPVGGKP AQPNDSLEWE EQFHYLDWDS LMRELGLHDD SAPAFKTATT NTTNSFAHQL  120
NPNCDPHIIP HFSELISHHQ PFDPTQLVHH HHHNLNFSEI NLGDHNLNLF DTTSSGEFHN  180
RGNINVGFDF VEDLIRVADC FDSDNSQLAQ AILDRLNQRL RSNTSPVGKP VGRALQRAAL  240
YFKDALQSLL SGSNRTARLS SWSEIVQTIR AYKAFSGISP IPMFSHFTTN QALLEALNGS  300
AFIHVVDFDI GLGGQYASLM KELAEKSESL RLSPPVVRIT AIVPEEYAVE SRLIRENLSQ  360
FAQDLKIRFQ IEFVLFRTFE VLSFKAIKFM EGEKTAVLLS TAALRRLSVA GFLTDVRRIS  420
PAVVVLVDAE GLGEEVGATT SFRRSFVCGL EFYSMVMESL DAAMVGGDWV RKIETFVLRP  480
RMAAAVEAAA GRKTAPFREM FHGAGMRPVL LSQFADFQAE CLLGKVQVRG FHVAKRQAEL  540
VLCWHDRALV ATSVWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-2419655525378Protein SCARECROW
5b3h_A7e-2419655524377Protein SCARECROW
5b3h_D7e-2419655524377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010099836.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010099836.10.0scarecrow-like protein 15
SwissprotO232101e-166SCL15_ARATH; Scarecrow-like protein 15
TrEMBLW9RB660.0W9RB66_9ROSA; Uncharacterized protein
STRINGXP_010099836.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-163GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]