PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010099839.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

C2H2

Protein Properties

Length: 532aa MW: 55693.4 Da PI: 9.1925

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010099839.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.3e-05	63	85	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_010099839.1 63 FICEICNKGFQRDQNLQLHRRGH 85 89*******************88 PP
2	zf-C2H2	11.1	0.0012	139	161	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + XP_010099839.1 139 WKCDKCSKKYAVQSDWKAHSKIC 161 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.99E-7	62	85	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.4E-5	62	85	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	6.4E-5	63	85	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.022	63	85	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.845	63	85	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	65	85	IPR007087	Zinc finger, C2H2
SMART	SM00355	210	104	134	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.9E-4	127	160	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.99E-7	134	159	No hit	No description
SMART	SM00355	150	139	159	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009937	Biological Process	regulation of gibberellic acid mediated signaling pathway
GO:0010029	Biological Process	regulation of seed germination
GO:0010431	Biological Process	seed maturation
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence Send to blast
MATDLDNSST ASGEASVSSS GNQTAPSIPK STPKKKRNLP GMPDPDAEVI ALSPKALLAT 60 NRFICEICNK GFQRDQNLQL HRRGHNLPWK LRQRSSKEVK KRVYVCPEPS CVHHDPSRAL 120 GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV QSDWKAHSKI CGTREYKCDC GTLFSRRDSF 180 ITHRAFCDAL AEESAKNQNN QPPNPPQDQV QAQNQTTGKL NSESEPKVQK KNSSSPPQPP 240 PPKSKEAPPS STSVQSGPSQ STGVISSSTL PIQTPAGLPE NPPRISEETT PEPGLNGSSN 300 SITSSSSNGS TSSSVFASLF APSTTSANLQ PPQSPAFTDL IRAMGPPDPP ADLAPSSSIE 360 PISLGLSTSH GSSIFGTAGQ ERRQYAPPPQ PAMSATALLQ KAAQMGAAAT NASLLRGLGI 420 MSSTSPSAQQ ENLQWPRRQV EPDSGSVAAG LGLGLPCDGG SGLKELMMGT PSMFGPKQTT 480 LDFLGLGMAA GGSPNGGLSA LITSIGGGLD VAAAAASFGG GEFSGKEIGR SS

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence Send to blast

MATDLDNSST ASGEASVSSS GNQTAPSIPK STPKKKRNLP GMPDPDAEVI ALSPKALLAT  60
NRFICEICNK GFQRDQNLQL HRRGHNLPWK LRQRSSKEVK KRVYVCPEPS CVHHDPSRAL  120
GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV QSDWKAHSKI CGTREYKCDC GTLFSRRDSF  180
ITHRAFCDAL AEESAKNQNN QPPNPPQDQV QAQNQTTGKL NSESEPKVQK KNSSSPPQPP  240
PPKSKEAPPS STSVQSGPSQ STGVISSSTL PIQTPAGLPE NPPRISEETT PEPGLNGSSN  300
SITSSSSNGS TSSSVFASLF APSTTSANLQ PPQSPAFTDL IRAMGPPDPP ADLAPSSSIE  360
PISLGLSTSH GSSIFGTAGQ ERRQYAPPPQ PAMSATALLQ KAAQMGAAAT NASLLRGLGI  420
MSSTSPSAQQ ENLQWPRRQV EPDSGSVAAG LGLGLPCDGG SGLKELMMGT PSMFGPKQTT  480
LDFLGLGMAA GGSPNGGLSA LITSIGGGLD VAAAAASFGG GEFSGKEIGR SS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-34	135	196	3	64	Zinc finger protein JACKDAW
5b3h_F	6e-34	135	196	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00592	DAP	Transfer from AT5G66730	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010099839.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010099839.1	0.0	protein indeterminate-domain 2
Swissprot	Q9LVQ7	0.0	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	W9RLI2	0.0	W9RLI2_9ROSA; Zinc finger protein MAGPIE
STRING	XP_010099839.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2218	32	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-142	C2H2-like zinc finger protein

Link Out ? help Back to Top
Entrez Gene	21392400

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]