PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010100069.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family bHLH
Protein Properties Length: 501aa    MW: 55450.7 Da    PI: 6.0913
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010100069.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.7e-13356402455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  XP_010100069.1 356 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 402
                     799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.0E-4249232IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831352401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-19353427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.54E-15355406No hitNo description
PfamPF000102.9E-10356402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-18356418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-15358407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MSEKFWVSVE DKVMVESVLG SEACQFLISL ASDNVLSNFI TPAGDLGGQQ GLCKLVEASN  60
WNYAIFWQVV SSKSGGSALI WGDGHCRNPK DGGSADKISR EDGNFEGVEK EAVKKRVLEK  120
LHACFGRSDE DNFPKKLDGV SDLEMFYLTS MYYTFQLDSP CGPVESYKSG KAIWASDVSS  180
CSHHYQSRSF LARVVGLQTV LFVPVNSGVV ELGTIKATPE EQSIVDMVNC TFGVVGSSSS  240
QTTKAFPKIF GHELSLGGSK SQSVNINFSP KVEDDSVFAS ESYDLQAIGP SNGSRTESNE  300
IKLFPQLNPM IVRGFNAQTR VSGVELPKDD ALPQLDERKP RKRGRKPANG REEPLNHVEA  360
ERQRREKLNQ RFYALRAVVP NISKMDKASL LGDAITYITD LQTKIRVMET EKQMVNNPQQ  420
FSMPEIDFQP RQEDAVVRMS CPLDSHPISS VVKTFREHEI LAQESDVSTV DNDKIVHTFS  480
IKTQAGEAKQ LKEKLLAAIS K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-30350417269Transcription factor MYC2
5gnj_B9e-30350417269Transcription factor MYC2
5gnj_E9e-30350417269Transcription factor MYC2
5gnj_F9e-30350417269Transcription factor MYC2
5gnj_G9e-30350417269Transcription factor MYC2
5gnj_I9e-30350417269Transcription factor MYC2
5gnj_M9e-30350417269Transcription factor MYC2
5gnj_N9e-30350417269Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1337345RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010100069.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010100069.10.0transcription factor bHLH3
SwissprotA0A3Q7H2160.0MTB3_SOLLC; Transcription factor MTB3
TrEMBLW9S0M50.0W9S0M5_9ROSA; Uncharacterized protein
STRINGXP_010100069.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82633445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-180bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]