PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010100174.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GATA
Protein Properties Length: 155aa    MW: 17531.4 Da    PI: 4.3198
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010100174.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.26.1e-15106136434
            GATA   4 CgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C+t + p+WRrgp g+k+LCnaCG++y k++
  XP_010100174.1 106 CRTQTPPMWRRGPLGPKSLCNACGIKYGKQE 136
                     ***************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.6E-895146IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-1096137No hitNo description
Gene3DG3DSA:3.30.50.102.9E-1297137IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.13E-9101132No hitNo description
PROSITE profilePS501149.763106132IPR000679Zinc finger, GATA-type
PfamPF003208.8E-13106136IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MNNRSSAFSP VPWIQLNDYN NIFLNPNTTG TIMNNVNGTR RKNIINGMKR KCGDDGDDQM  60
LKAQAEVFVF DFGEEEEEEE EVDQDYHVVE IDDGDDANKC CSNIYCRTQT PPMWRRGPLG  120
PKSLCNACGI KYGKQEEILS RPQTGISDVE ARSET
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010100174.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024023017.15e-89transcription factor stalky
TrEMBLW9S0Y01e-112W9S0Y0_9ROSA; GATA transcription factor 29
STRINGXP_010100174.11e-113(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137781622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.19e-15GATA transcription factor 29