PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010100199.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

HD-ZIP

Protein Properties

Length: 192aa MW: 21891.7 Da PI: 8.821

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010100199.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.4	5.9e-19	8	63	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++++++++eq++ Le +F++++ p ++++ +A +lgL+ +qV +WFqNrRa+ + XP_010100199.1 8 RKNKRRISNEQVKSLEIMFQSDSRPESKTKRAIAGELGLQPCQVAIWFQNRRARSR 63 78999*************************************************98 PP
2	HD-ZIP_I/II	105.7	3.6e-34	10	101	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +krr+s+eqvk+LE +F+++++ e++ K ++a eLglqp qva+WFqnrRAR +tkq+E++y+ Lk++y++l ++ e+L+ke+ eL+ +l+e XP_010100199.1 10 NKRRISNEQVKSLEIMFQSDSRPESKTKRAIAGELGLQPCQVAIWFQNRRARSRTKQIEREYSILKTSYNNLFSRVESLKKENLELNIQLRE 101 79************************************************************************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.763	5	65	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.88E-16	6	66	IPR009057	Homeodomain-like
SMART	SM00389	3.2E-17	7	69	IPR001356	Homeobox domain
CDD	cd00086	5.87E-14	8	66	No hit	No description
Pfam	PF00046	2.2E-16	8	63	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.8E-17	8	63	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	40	63	IPR017970	Homeobox, conserved site
Pfam	PF02183	2.2E-12	65	106	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MNSMTCARKN KRRISNEQVK SLEIMFQSDS RPESKTKRAI AGELGLQPCQ VAIWFQNRRA 60 RSRTKQIERE YSILKTSYNN LFSRVESLKK ENLELNIQLR EVKTLLGMHH ESENSGFVKT 120 EEAEGGKKAI KSNGVTSHLL EGCKDKVGKD AEVVELAQSR DGSLTSSVNW SSFESCCYVN 180 ETSCSQWWEF LS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010100199.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010100199.1	1e-140	homeobox-leucine zipper protein ATHB-12
TrEMBL	W9S105	1e-138	W9S105_9ROSA; Homeobox-leucine zipper protein ATHB-7
STRING	XP_010100199.1	1e-139	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16057	9	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	4e-32	homeobox 7

Link Out ? help Back to Top
Entrez Gene	21398447