PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010100277.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family Trihelix
Protein Properties Length: 384aa    MW: 43876.2 Da    PI: 6.4501
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010100277.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.13.7e-2667154286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr...tsessstcpyfdqle 86 
                     W ++e++ Li++rrem+  ++++k++k+lWe++s kmrergf r p++C++kw+nl k++kk k++++++   +   s +++y+++++
  XP_010100277.1  67 WVQDETRSLIALRREMDGLFNTSKSNKHLWEQISVKMRERGFDRLPTMCTDKWRNLLKEFKKAKHHDRGGgggSTSGSAKMSYYKEID 154
                     *****************************************************************99987444566677999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.04959123IPR017877Myb-like domain
CDDcd122033.13E-2765130No hitNo description
PfamPF138372.3E-1966156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MYLSSEKPRP INFYKEEESR EMMIEVVSNG GDISTHQQPP PSQMVVGDSS GGEDHEIKAP  60
KKRAETWVQD ETRSLIALRR EMDGLFNTSK SNKHLWEQIS VKMRERGFDR LPTMCTDKWR  120
NLLKEFKKAK HHDRGGGGGS TSGSAKMSYY KEIDEILRER NKINAHYKSP TPPPKVDSFI  180
QFSDKGIEDA NISFGPVEAC GRQTLNLERR LDHDGHPLAI TAAEAVAASG VPPWNWRETP  240
GNGGDGQSFG GRVISVKWGD YTRRIGIDGT AEAIKEAIKS AFRLRTKRAF WLEDEDQIIR  300
SLDRDMPLGN YLLHVDEGLV IKVCLYDESD HMPVHTEEKI FYTEDDYRDF LTRRGWTCLR  360
EFDNYRNIDN MDDLRPGGIY RGVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A6e-4861152186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00004PBMTransfer from 920224Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010100277.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010100277.10.0trihelix transcription factor GT-4
SwissprotQ9FX530.0TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLW9RMR70.0W9RMR7_9ROSA; Uncharacterized protein
STRINGXP_010100277.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68173248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.10.0Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]