PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010100436.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

YABBY

Protein Properties

Length: 257aa MW: 28418.5 Da PI: 6.698

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010100436.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	197.1	7.4e-61	10	165	5	168
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 s+eq+CyvqC+fC+til+vsvP +sl++vvtvrCGhCt llsvn++kas + h l + ++++++ee +l++ ++++ + + s XP_010100436.1 10 LSAEQICYVQCGFCTTILLVSVPCSSLSMVVTVRCGHCTGLLSVNMTKASFIP---LH----LLASFTQDEQKEEVDLEEVDTQNATDIR--SPV 95 5789***************************************99887542...22....2334555666666666555554433333..332 PP YABBY 100 klsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168 s+ne+ +v v + v++PPekr+r+Psaynrfi+eei+r+k +nP+++h+eafs+aaknWa fP+ + XP_010100436.1 96 VSSDNEEVDVVSVNQiVNKPPEKRKRAPSAYNRFIREEIKRLKDENPNMAHKEAFSTAAKNWANFPPTEY 165 33677777777777779***********************************************9776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.2E-60	12	165	IPR006780	YABBY protein
SuperFamily	SSF47095	2.09E-10	110	164	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.1E-7	113	164	IPR009071	High mobility group box domain
CDD	cd01390	1.96E-7	120	177	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MSALNHLLDL SAEQICYVQC GFCTTILLVS VPCSSLSMVV TVRCGHCTGL LSVNMTKASF 60 IPLHLLASFT QDEQKEEVDL EEVDTQNATD IRSPVVSSDN EEVDVVSVNQ IVNKPPEKRK 120 RAPSAYNRFI REEIKRLKDE NPNMAHKEAF STAAKNWANF PPTEYKEDEE SCSQGKENVT 180 LDSHVNKHHG AEFLALRRYC VKIMGVAALS WAPKRCPFYP TALIPSDFSA KALQTGAKVP 240 PILPHCADSV KLSAKAL

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010100436.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024024007.1	1e-136	axial regulator YABBY 4
Swissprot	Q9LDT3	1e-63	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	W9RKR4	0.0	W9RKR4_9ROSA; Uncharacterized protein
STRING	XP_010100436.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6144	28	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	1e-58	YABBY family protein

Link Out ? help Back to Top
Entrez Gene	21410356

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]