PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010100685.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HD-ZIP
Protein Properties Length: 182aa    MW: 20631 Da    PI: 7.6779
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010100685.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox40.45.1e-1317482556
                    --HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox 25 psaeereeLAkklgLterqVkvWFqNrRakek 56
                    +  +++ +LA++lgL+ rqV +WFqN+Ra++k
  XP_010100685.1 17 LEPRKKVQLASELGLQPRQVAIWFQNKRARWK 48
                    6678899************************9 PP
2HD-ZIP_I/II94.51.1e-3013862093
     HD-ZIP_I/II 20 eeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
                    ++++Lep++Kv+la+eLglqprqva+WFqn+RAR+k+kqlE+dy+ L + y++l+++ e+L+ke+++L  +l++
  XP_010100685.1 13 TKTRLEPRKKVQLASELGLQPRQVAIWFQNKRARWKSKQLERDYSILLADYNSLASRFEALKKEKQSLVLQLQK 86
                    4669****************************************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003897.4E-5754IPR001356Homeobox domain
SuperFamilySSF466895.56E-121660IPR009057Homeodomain-like
PfamPF000462.0E-101748IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-131757IPR009057Homeodomain-like
CDDcd000869.42E-91951No hitNo description
PROSITE profilePS5007112.3742050IPR001356Homeobox domain
PRINTSPR000314.9E-62130IPR000047Helix-turn-helix motif
PROSITE patternPS0002702548IPR017970Homeobox, conserved site
PRINTSPR000314.9E-63046IPR000047Helix-turn-helix motif
PfamPF021833.0E-145089IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009615Biological Processresponse to virus
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MTHPSQPPSA RSTKTRLEPR KKVQLASELG LQPRQVAIWF QNKRARWKSK QLERDYSILL  60
ADYNSLASRF EALKKEKQSL VLQLQKLNND VKQRPREESE NEKAAKSESE AKPSSSIEKS  120
EHVLGVLSDD DSNRKAEYFG LEDQQELLNM NMAEPKPADS SPENWGSLNS ETLFNESSGG  180
VS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:11374882, ECO:0000269|PubMed:15604708}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00013PBMTransfer from AT3G61890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010100685.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA), by cold and salt stress. {ECO:0000269|PubMed:15369784, ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:9617808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024024137.11e-127homeobox-leucine zipper protein ATHB-12
SwissprotQ9M2765e-46ATB12_ARATH; Homeobox-leucine zipper protein ATHB-12
TrEMBLW9RLG51e-128W9RLG5_9ROSA; Homeobox-leucine zipper protein ATHB-12
STRINGXP_010100685.11e-129(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.19e-44homeobox 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]