PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010100709.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 339aa    MW: 38748.2 Da    PI: 9.0803
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010100709.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.5e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed ll ++++++G g+W++ +++ g+ R++k+c++rw +yl
   XP_010100709.1 14 RGPWTPKEDALLTKYIQEHGEGHWRSLPKKAGLLRCGKSCRLRWMNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding53.26.9e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T++Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
   XP_010100709.1  67 RGNITPDEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                      7999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.214961IPR017930Myb domain
SuperFamilySSF466891.47E-3011108IPR009057Homeodomain-like
SMARTSM007173.3E-131363IPR001005SANT/Myb domain
PfamPF002494.7E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-241568IPR009057Homeodomain-like
CDDcd001671.27E-101661No hitNo description
PROSITE profilePS5129427.362116IPR017930Myb domain
SMARTSM007172.1E-1666114IPR001005SANT/Myb domain
PfamPF002492.3E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2669116IPR009057Homeodomain-like
CDDcd001673.43E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGRAPCCAKV GLHRGPWTPK EDALLTKYIQ EHGEGHWRSL PKKAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TPDEDDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKKLRGQG  120
TDPNTHKKLS GLPQVANNNK KKKKVNNTNS VTTNKNKNKK NNSNNKKVET VNTIAMMSKN  180
NVDPMKQKVH LPKPIRVTRN YSFEGNYTTT SGSSSQEKGS SADTTSVDCD DQEVDVSWLS  240
FEVGDDGDVG FLINHDNHDH HVNGSSSDHQ YHHHHPYLER ESQIIAEGQV HNATLQKLYE  300
EYLQLLKTED QQQQQQHHHH HHINHDQVEL DSFAESLLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010100709.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010100709.10.0myb-related protein 308
TrEMBLW9S2F90.0W9S2F9_9ROSA; Transcription repressor
STRINGXP_010100709.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.14e-69myb domain protein 5