PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010100721.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family ARF
Protein Properties Length: 695aa    MW: 77318 Da    PI: 6.7666
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010100721.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3733.7e-23129230199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++ +k+a+e+       +   + +++l  +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + +
  XP_010100721.1 129 FCKILTASDTSTHGGFSVLRKHATEClppldmtQ--ATPTQELASRDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGD 219
                     99****************************9543..445569************************************************..448 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++el+v+v+r+
  XP_010100721.1 220 DGELRVGVRRS 230
                     9999****996 PP
2Auxin_resp104.21.6e-34255335183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aaha++t+++F v+Y+Pr+ + +F v v+k+ +a+++++svGmRfkm+fe+eds+err++Gt+vgv d ++++W++SkWrsLk
  XP_010100721.1 255 AAHAITTQTIFIVYYKPRT-NHQFLVGVNKYIEAVSHNFSVGMRFKMRFEGEDSPERRFTGTIVGVGD-SSSQWKDSKWRSLK 335
                     79****************7.78**********************************************.555*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.68E-40117258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-39120244IPR015300DNA-binding pseudobarrel domain
CDDcd100179.02E-19127229No hitNo description
SMARTSM010198.0E-21129231IPR003340B3 DNA binding domain
PfamPF023624.3E-21129230IPR003340B3 DNA binding domain
PROSITE profilePS5086312.012129231IPR003340B3 DNA binding domain
PfamPF065071.9E-32255335IPR010525Auxin response factor
PfamPF023092.7E-12568665IPR033389AUX/IAA domain
SuperFamilySSF542772.03E-12575657No hitNo description
PROSITE profilePS5174526.311581662IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MAHPHGGSSS TPRSNSEWRH IDPLYKDLWL TCAGPLVEIP RLHERVFYFP QGHMEQLELS  60
MNQEQNQQFP LFNLPPKILC KVVNTEYMAE PETDEVYAQI TLVPEMDQVE ITSPDPVMPE  120
PPRPAVHSFC KILTASDTST HGGFSVLRKH ATECLPPLDM TQATPTQELA SRDLHGYEWK  180
FKHIFRGQPR RHLLTTGWST FVTSKRLVAG DAFVFLRGDD GELRVGVRRS ARQQSLMPSS  240
VISSHSMHLG VLATAAHAIT TQTIFIVYYK PRTNHQFLVG VNKYIEAVSH NFSVGMRFKM  300
RFEGEDSPER RFTGTIVGVG DSSSQWKDSK WRSLKVQWDE HATIQRPDTV SPWEIEPFVA  360
SNPLNITQPA PKNKRPRPVE IPSSEVATIT SGASAFWYHG SSQSTDVTQL GSNAEAQSSD  420
RQVVWPAKQK DTSNGNYYGS VVRSEGVWPS SPDVDMSLNL FPDSMGDNIT VTARSALSGF  480
ASPVSSRPSI QKEKGTKSDA SVGCRLFGIN LTSNSTIVSP PDREPTCLVV ASSSKGSSPR  540
YASEDDKAQN GEALKLLAEQ KLTPQAPPRK DTQSKQGSSS RSRTKVQMQG VAVGRAVDLT  600
TLNGYNDLIN ELEKMFEIKG ELHPPSKWAV VFTDDENDMM LVGDDPWTEF CKMVKKILIY  660
SSEEVKKMSN LKLRSSSLEC EGTDVSIDSE HRAET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1742235817355Auxin response factor 1
4ldw_A1e-1742235817355Auxin response factor 1
4ldw_B1e-1742235817355Auxin response factor 1
4ldx_A1e-1742235817355Auxin response factor 1
4ldx_B1e-1742235817355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1373377KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010100721.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024024123.10.0auxin response factor 18 isoform X1
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
TrEMBLW9RP000.0W9RP00_9ROSA; Auxin response factor
STRINGXP_010100721.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61830.10.0auxin response factor 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]