PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010100724.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family bHLH
Protein Properties Length: 618aa    MW: 68420.8 Da    PI: 6.7116
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010100724.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.1e-13446492455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  XP_010100724.1 446 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 492
                     799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-4953235IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047442491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-14445496No hitNo description
SuperFamilySSF474593.14E-18445506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10446492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-18446505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-16448497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MKIEVGLGGS GVWNDEDKAM AAAVLGTRAF DYLISSSVTN ENLLMAVGSD ENLQNKLSDL  60
VDRPNASNFS WNYAIFWQIS RSKSGDWVLG WGDGSCREPR EGEESEASKI LNLRLEDETQ  120
QRMRKRVLQK LHNLFGGSDE DNYALGLDRV TDTEMFFLAS IGEGGPGKCY ASGKHMWVSD  180
ALKSASDYCV RSFLAKSAGI QTIVLVPTDV GVVELGSVRS VGESVELLQS VRLLFASQSS  240
LMRVGKPAVT GLPVVGEKRD ESIRLANSGI VVECRDGVPK IFGQDLNTGN VIRPHHREKL  300
AIRKLDDQRQ PWDMYSNGNR IAFSSPRNGI IHGSNWPHVQ GVKQGNPTEI YVSQSQGTNN  360
IHEVVNGVRE DFRLNNYPPQ KQVQMQLDFS GATSRPAVVS HRPINADSEH SDVEASCKEE  420
RPGTAEERRP RKRGRKPANG REEPLNHVEA ERQRREKLNQ RFYALRAVVP NISKMDKASL  480
LGDAIAYINE LQAKLKVMEA EREKVGNTSR DSSAMAMETN NPDLENQNRV PDVDVQAVHD  540
EVIVKVSCPL DSHPASRVIQ AFKEAQINVV ESKLAAVNDT VFHTFVIKSQ GSEQLTKEKI  600
IAAFSRESNS SWTLSSVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-30440507269Transcription factor MYC2
5gnj_B4e-30440507269Transcription factor MYC2
5gnj_E4e-30440507269Transcription factor MYC2
5gnj_F4e-30440507269Transcription factor MYC2
5gnj_G4e-30440507269Transcription factor MYC2
5gnj_I4e-30440507269Transcription factor MYC2
5gnj_M4e-30440507269Transcription factor MYC2
5gnj_N4e-30440507269Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1427435RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010100724.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024024130.10.0LOW QUALITY PROTEIN: transcription factor bHLH13
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLW9S2H50.0W9S2H5_9ROSA; Uncharacterized protein
STRINGXP_010100724.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]