PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010101404.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GRAS
Protein Properties Length: 481aa    MW: 53886.5 Da    PI: 6.2575
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010101404.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS295.61.3e-90984732374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlar.svselykalppsetsekn...sseelaalklfsevsPil 91 
                      +lL+e A a+s +++ +a++lL +lse+asp++ +  +R++ayf++A+++r+ + s    y+ ++ +  ++++    +   +++++f++v P+l
  XP_010101404.1  98 MTLLFESAVAISVDNFVEARRLLLELSETASPYApSCAERVVAYFAQAMSTRVINtSLGVPYHDVTKNLYANYRnyqNTLLRNSFQAFNDVAPFL 192
                     679*******************************8999****************944444466554444443333324444466788******** PP

            GRAS  92 kfshltaNqaIleavegeervHiiDfdisqG..lQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                     kf+h+t NqaIlea++g+  vH+iD+d  +   +QWpaLl+aLa+Rpegpp ++R+T++++    s++ l+  +++L+ fA++lg++fefn++ +
  XP_010101404.1 193 KFAHFTSNQAILEAFHGQPFVHVIDLDFLHVglFQWPALLHALATRPEGPPsHVRLTALAA----SSDHLSDAAKNLSGFAKRLGISFEFNPVGS 283
                     ***************************9885346*************99888*********....99*************************966 PP

            GRAS 184 k.rledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                     + +++dl+++  rv   +EalaV++    h+l++ ++s  +    +++lv +l+P+++++veq+++  ++sFl+rf+ +l+yys+l d+l a l+
  XP_010101404.1 284 DtDFSDLRVRIRRVVDeREALAVHWLR--HHLYEANGSEWK----TMRLVEELRPRILTLVEQDMSWHGGSFLDRFVGSLHYYSTLSDALGACLG 372
                     56888988877766556********99..999977777777....************************************************** PP

            GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaG.Fkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLv 368
                     +++ +r+ vE  ++ rei+nv+  +g++   ++ + ++Wr+ + + G + +v++s +aa+qa+l++++++  + gyrv + +g+l lgWk+ +L+
  XP_010101404.1 373 TDDLKRNEVESGVVYREISNVLGVAGRSGSGEEIKIGSWRREMAARGcLAQVAMSANAAAQAQLIVNMFGggGGGYRVVQGDGTLRLGWKETSLY 467
                     ****************************999999*********9988689*******************975556******************** PP

            GRAS 369 svSaWr 374
                     +vSaW+
  XP_010101404.1 468 TVSAWT 473
                     *****6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.59171451IPR005202Transcription factor GRAS
PfamPF035144.4E-8898473IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MKAGFETVNH GSTLDHPMTM IQTHEPWNIS SNVRPCLNLN KRNELSEWVE QITKQLIDDD  60
DDENDNEANT FPTSNDNNNN IIKYHHVKYD HDHCLSLMTL LFESAVAISV DNFVEARRLL  120
LELSETASPY APSCAERVVA YFAQAMSTRV INTSLGVPYH DVTKNLYANY RNYQNTLLRN  180
SFQAFNDVAP FLKFAHFTSN QAILEAFHGQ PFVHVIDLDF LHVGLFQWPA LLHALATRPE  240
GPPSHVRLTA LAASSDHLSD AAKNLSGFAK RLGISFEFNP VGSDTDFSDL RVRIRRVVDE  300
REALAVHWLR HHLYEANGSE WKTMRLVEEL RPRILTLVEQ DMSWHGGSFL DRFVGSLHYY  360
STLSDALGAC LGTDDLKRNE VESGVVYREI SNVLGVAGRS GSGEEIKIGS WRREMAARGC  420
LAQVAMSANA AAQAQLIVNM FGGGGGGYRV VQGDGTLRLG WKETSLYTVS AWTSCTYNVF  480
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-10210347324378Protein SCARECROW
5b3h_D1e-10210347324378Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010101404.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010101404.10.0scarecrow-like protein 23
TrEMBLW9RFI00.0W9RFI0_9ROSA; Uncharacterized protein
STRINGXP_010101404.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117873138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.13e-90GRAS family protein