PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010101468.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HD-ZIP
Protein Properties Length: 663aa    MW: 72609.3 Da    PI: 5.8389
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010101468.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.18.2e-2058113156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  XP_010101468.1  58 KKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 113
                     688999***********************************************998 PP
2START54.24.5e-18248357192
                     HHHHHHHHHHHHHHHHC-TT-E....EEEEXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWv....kssesengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++elv++a+a++p+W     +sse+ n+de+l++f+++ +      ++ea+r+s+vv+m+++ lve+l+d+k qW++ +     +a+tl
  XP_010101468.1 248 ELAVAAMEELVRMAQAGDPLWIpgdnSSSEMINEDEYLRSFPRGIGpkplgMKSEASRESAVVIMNHTHLVEILMDVK-QWSTVFCgivsRAMTL 341
                     57899****************843334559*************999********************************.******99999***** PP

                     EEECTT......EEEE CS
           START  83 evissg......galq 92 
                     + +s+g      galq
  XP_010101468.1 342 DILSTGvagnynGALQ 357
                     ******7766666665 PP
3START44.34.7e-15359401164206
                     EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     v+wvehv++++r +h+++r+lv+sgla+gak+wvatl+rqce+
  XP_010101468.1 359 VIWVEHVEVDDRAVHNIYRPLVNSGLAFGAKRWVATLDRQCER 401
                     89***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-2240113IPR009057Homeodomain-like
SuperFamilySSF466893.05E-1943115IPR009057Homeodomain-like
PROSITE profilePS5007116.82755115IPR001356Homeobox domain
SMARTSM003897.5E-1956119IPR001356Homeobox domain
CDDcd000868.00E-1958116No hitNo description
PfamPF000462.0E-1758113IPR001356Homeobox domain
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PROSITE profilePS5084816.076239347IPR002913START domain
CDDcd088753.89E-69243400No hitNo description
SMARTSM002342.5E-4248401IPR002913START domain
PfamPF018522.1E-11249356IPR002913START domain
PROSITE profilePS5084812.278359404IPR002913START domain
PfamPF018522.7E-10359401IPR002913START domain
SuperFamilySSF559611.3E-25421654No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MFQPNMFETH HHLLDMSHKS SENELGKVRD DDLETKSGTE TMDAPSGDDQ DPNQRPKKKR  60
YHRHTQRQIQ EMEAFFKECP HPDDKQRKEL SRELGLEPLQ VKFWFQNKRT QMKAQHERHE  120
NSILKAENEK LRAENNRYKE ALSNATCPNC GGPAALGEMS FDEQHLRIEN ARLREEIDRI  180
SGIAAKYVGK PLSSLSHLSS HVSSRSLDMG AGNFGSQSGF VGEMFGSSSD LLRSVSVPTE  240
ADKPIIVELA VAAMEELVRM AQAGDPLWIP GDNSSSEMIN EDEYLRSFPR GIGPKPLGMK  300
SEASRESAVV IMNHTHLVEI LMDVKQWSTV FCGIVSRAMT LDILSTGVAG NYNGALQVVI  360
WVEHVEVDDR AVHNIYRPLV NSGLAFGAKR WVATLDRQCE RLASSMASNI PAENLCVITS  420
PEGRKSMLKL AERMVMSFCV GVGASTAHAW TTLSATGSDD VRVMTRKSMD DPGRPPGIVL  480
SAATSFWLPV PPKRLFDFLR DENSRSEWDI LSNGGLVQEM AHIANGRDPG NCVSLLRVNS  540
ANSSQSNMLI LQESCTDSTG SYVIYAPVDI VAMNVVLSGG DPDYVALLPS GFAILPDGPT  600
NFNAGGGILE VGSGGSLLTV AFQILVDSVP TAKLSLGSVA TVNNLIKCTV ERIRAAVITC  660
ENA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010101468.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695486.10.0PREDICTED: homeobox-leucine zipper protein ROC7
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLW9RR030.0W9RR03_9ROSA; Homeobox-leucine zipper protein MERISTEM L1
STRINGXP_010101468.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2300644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]