PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010101635.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family bHLH
Protein Properties Length: 718aa    MW: 78938.2 Da    PI: 7.9872
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010101635.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.4e-12457495244
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiL 44 
                     r +h++ E+rRR++iN++f+ Lrel+P+     ++K +Ka+ L
  XP_010101635.1 457 RSKHSATEQRRRSKINDRFQMLRELIPHT----DQKRDKASFL 495
                     889*************************8....8999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-13452496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-11454496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.227455505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-9457495No hitNo description
PfamPF000108.9E-10457495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MRIKSFVTSL LSEYDHIVTT ILHGKDKITF DEVCAALYNN EIWKKDQKEH KSTSAAKYED  60
DESEFVLIST LSKSQYDEWI MDSGCTYHMC SNKEWFFNFE ELNEGVVNIG TNDALQSTGI  120
GSIHLKCHDG STKVLTDVRY VPHLKKNHIF LGVLGSKGFT VTMRDGILKV VSSTLVNLVK  180
HGLLKGAKTG KLEFYERCVL AKQLKVKFGR KPTHDFLSLY SHSTTQQDPR PPSQGGYLKT  240
HDFLQPLERV GKTCAKEETS VEISTSEKPP PPAPPPVEHV LPGGIGTYSI SHISNYFNQR  300
VPKPEGMVFT AAQASSTDRN DENSNCSSYT GSGFTLWEES AVKKGKTGKE NMAEKASVLE  360
PAARVGQWAS SERPSQSSSN NHRGSFSSLS SSQPSGHRSR SFMEMIKSAK CSSQDEELED  420
EEPFVLKKET STVTTTHKEL RVKVDGKSSD QKANTPRSKH SATEQRRRSK INDRFQMLRE  480
LIPHTDQKRD KASFLLERNN HRIGESFDHS QGMNGGPGPA LVFTGKFEEK HISVSPTVPG  540
SAQNPVESDT STATITNKGL SFPMSLQPNF FSPLRNGGEV PQAPSSHPSA VENTSPQPQS  600
QLCQTRSCTT VDGAVATDKL KEEELTIEGG TISISSAYSQ GLLNSLTQAL QSSGVDLSQA  660
SISVQIELGK RANSRTAATT SITKDNEFPS SNQEIKQSRL ATGDDSDLAQ KKLKTGKN
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010101635.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024024837.10.0transcription factor BIM1 isoform X2
SwissprotQ9LEZ31e-104BIM1_ARATH; Transcription factor BIM1
TrEMBLW9RRJ10.0W9RRJ1_9ROSA; Uncharacterized protein
STRINGXP_010101635.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72523145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.57e-99bHLH family protein
Publications ? help Back to Top
  1. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]