PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010101660.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25776.7 Da    PI: 9.5433
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010101660.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.47.1e-32959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+gklye++s
  XP_010101660.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS 59
                    79***********************************************96 PP
2K-box73.46.3e-25831631089
           K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell.leqieelqkkekelqe 89 
                       ++++s++qe+ kLk+++e Lqr+qR+llGedL++Ls keL++Le+qLe+sl++iRs++  l+ ++q  ++q + ++l +
  XP_010101660.1  83 PINDTQSSYQEYLKLKARVEVLQRSQRNLLGEDLGPLSSKELEHLENQLETSLRHIRSTRRILIdFSQRFQTQSMLDQLAD 163
                     55789*****************************************************99877745677777766666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.333161IPR002100Transcription factor, MADS-box
SMARTSM004327.0E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-34279IPR002100Transcription factor, MADS-box
CDDcd002651.45E-45278No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-33323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-333859IPR002100Transcription factor, MADS-box
PfamPF014863.8E-2183167IPR002487Transcription factor, K-box
PROSITE profilePS5129711.74487194IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFCSG  60
SCMIKTLEKY QKYSYGSLEA TQPINDTQSS YQEYLKLKAR VEVLQRSQRN LLGEDLGPLS  120
SKELEHLENQ LETSLRHIRS TRRILIDFSQ RFQTQSMLDQ LADLQQRCPI PPHIEIGPNM  180
RLTNGAHLHV RDGLLPVKYN SVGPDEMNMS APAQIINGFA HGWML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A6e-22751851104Developmental protein SEPALLATA 3
4ox0_B6e-22751851104Developmental protein SEPALLATA 3
4ox0_C6e-22751851104Developmental protein SEPALLATA 3
4ox0_D6e-22751851104Developmental protein SEPALLATA 3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010101660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ5061571e-168KJ506157.1 Ficus carica MADS-box protein (MADS6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024024829.11e-120MADS-box protein EJ2
SwissprotQ396852e-91CMB1_DIACA; MADS-box protein CMB1
TrEMBLW9RRK31e-167W9RRK3_9ROSA; MADS-box protein
STRINGXP_010101660.11e-167(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.12e-77MIKC_MADS family protein