PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010101712.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C3H
Protein Properties Length: 360aa    MW: 40964.5 Da    PI: 10.1574
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010101712.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH437.3e-14276301126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +ktelC+ ++++G C+yG+ C+FaHg
  XP_010101712.1 276 FKTELCNKWQEMGNCPYGEHCQFAHG 301
                     79***********************8 PP
2zf-CCCH261.7e-08314338125
                     --S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                     ykte Cr  +++  C+yG rC+F H
  XP_010101712.1 314 YKTEVCRMVLAGIACPYGHRCHFLH 338
                     9**********99************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.1E-17272308IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-9275302IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-10275307IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.643275303IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-11276301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-7309342IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-12309341IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5313340IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.643313341IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5314338IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MQTNVSLPSS SSKFQSIFRR EPSMAFTELD SDSSISAING NRLYNTLLVQ DRQEMVNRHS  60
LCLHRLRRAA DEATSLRREN TSLRSVNVEL NKKLRLLIQA SVQNRLGSWT MFRGEKGTEK  120
KAIRFPEGET RNERRTSSIG SEDERFSLPK SISVKSEEYL RKAQAIAING GRTRHSSQSR  180
IPALQNVKSR LPSPPPQFSV PLLTSQPLLV SDSPFLFFFS QSNSSPNFDA HGEFFRCCFS  240
SYTFLVHPHK RKVYVGGGKN NDHEPIEIEV NRQGSFKTEL CNKWQEMGNC PYGEHCQFAH  300
GIEELRPVIR HPRYKTEVCR MVLAGIACPY GHRCHFLHAL ADQELSSSGL LKPRAVKLNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A7e-21276338466Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010101712.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010101712.10.0zinc finger CCCH domain-containing protein 15
SwissprotQ9C9F53e-43C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLW9RGH00.0W9RGH0_9ROSA; Zinc finger CCCH domain-containing protein 15
STRINGXP_010101712.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-45C3H family protein