PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010101726.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HD-ZIP
Protein Properties Length: 238aa    MW: 26641.2 Da    PI: 8.1233
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010101726.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.6e-1977131256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq + Lee F+++++++ +++e LA +l+L+ rqV vWFqNrRa+ k
  XP_010101726.1  77 RKKLRLTKEQSRLLEESFRQHHTLNPKQKEALALQLKLKPRQVEVWFQNRRARSK 131
                     78889************************************************98 PP
2HD-ZIP_I/II118.14.8e-3877165189
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                     +kk+rl+keq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+
  XP_010101726.1  77 RKKLRLTKEQSRLLEESFRQHHTLNPKQKEALALQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRA 165
                     69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-1859127IPR009057Homeodomain-like
SuperFamilySSF466893.51E-1963134IPR009057Homeodomain-like
PROSITE profilePS5007116.98973133IPR001356Homeobox domain
SMARTSM003892.3E-1775137IPR001356Homeobox domain
CDDcd000864.62E-1776134No hitNo description
PfamPF000461.7E-1677131IPR001356Homeobox domain
PROSITE patternPS000270108131IPR017970Homeobox, conserved site
PfamPF021837.8E-10133167IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.4E-22133176IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MAVLPMSSSS LELTISVPGF SSSPSLPSSV RDLDINQVPS IEADHDHDHQ EEWMMITANM  60
DDEDEMSTTN IGSGPPRKKL RLTKEQSRLL EESFRQHHTL NPKQKEALAL QLKLKPRQVE  120
VWFQNRRARS KLKQTEMECE YLKRWFGSLT EQNRRLQREV EELRAMKVGP PTVISPHSYE  180
PLPASTLTMC PRCERVTTTT TTTTSAATNS HHDKVGPTKA VAASTAAALS PKVATPAL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125133RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010101726.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024024875.11e-154homeobox-leucine zipper protein HOX3
SwissprotQ0JKX12e-81HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH382e-81HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLW9RG791e-175W9RG79_9ROSA; Homeobox-leucine zipper protein HOX3
STRINGXP_010101726.11e-176(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95063040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.11e-64homeobox-leucine zipper protein 17