PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010101937.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family B3
Protein Properties Length: 557aa    MW: 60941.5 Da    PI: 7.3518
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010101937.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.91.3e-1631121199
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffkv+       s  l lp kfa+e+ g++  e    +led +g++Wev++  ++  g   + +GW++F+++++L+ gDfvvF   ++s f  vv
  XP_010101937.1  31 FFKVM--LGDDFSEVLFLPPKFASEMsGLV-GE--SASLEDANGKQWEVTV--SNVNGFLAFHQGWSNFASSHDLELGDFVVFFQLKQSLF--VV 116
                     77777..444455669**********6555.44..59**************..999999***********************984444555..99 PP

                     EEE-S CS
              B3  95 kvfrk 99 
                     k++++
  XP_010101937.1 117 KIYDR 121
                     99887 PP
2B333.76.7e-114925483290
                     --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3  32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     e kt+ ++d+  r W v++    k+g +vl +GW +  kan++k+gD + F+l+ +s++
  XP_010101937.1 492 ERKTVYIRDSAKRLWPVNY--HEKPGLTVLVSGWAGLSKANRIKSGDQCCFTLEVESDG 548
                     5679***************..*******************************9876766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-2023124IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-2226124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.28129122IPR003340B3 DNA binding domain
CDDcd100175.35E-1930120No hitNo description
PfamPF023623.5E-1431121IPR003340B3 DNA binding domain
SMARTSM010197.3E-1431122IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-10479543IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.052480557IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-9491545IPR015300DNA-binding pseudobarrel domain
CDDcd100171.95E-6492543No hitNo description
PfamPF023627.8E-8492548IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MDCNAKSCAT CTHTCWLVHR RKSSSPVVAS FFKVMLGDDF SEVLFLPPKF ASEMSGLVGE  60
SASLEDANGK QWEVTVSNVN GFLAFHQGWS NFASSHDLEL GDFVVFFQLK QSLFVVKIYD  120
RTACERVSFG RKCFKRRKIK DDNSSTGKDG PPRTSTASCS DVEVCCMLNR NLGEQQEEDR  180
ICNFDLSLFE TWSYSGREGS NKADATSVIS PHQVVQSIAR GALHSQKDSW ITPSSWHRLP  240
MPVTAKVKRM NVVKEEPMEI ISDPCSQEAI QKLPGGSSKL TEGEYFRTIS MSVRQDGRAS  300
QVAKADMVGQ VVTSDGVAHV VKTDEVAKTD TVVQVVKTQV AKTGGVAPVV KADSVVQMVK  360
AEPVNLVGTE NGQSAKVMKV VKKEPVENKS APCSQEIMGK LCGESSGVTK DSLLGSTVPQ  420
VAVKTEGIDF DRSFPTFSPW TRVPLVAVKT EVVDLDERSP TFSPLLAIGG ESFIELPECL  480
PFPVVRGRAD VERKTVYIRD SAKRLWPVNY HEKPGLTVLV SGWAGLSKAN RIKSGDQCCF  540
TLEVESDGIY ALTVVPK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010101937.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024025032.10.0uncharacterized protein LOC112090255 isoform X1
TrEMBLW9S5V10.0W9S5V1_9ROSA; B3 domain-containing protein
STRINGXP_010101937.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124762828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.14e-13B3 family protein