PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010102010.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

NAC

Protein Properties

Length: 243aa MW: 27453.6 Da PI: 5.0663

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010102010.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	153.6	9e-48	4	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrF Pt+eelv++yL +k+egk+ e+++vi+ +diy +ePwdLpk +++++++w+fF++r++++a+g r+nr+t+sgyWkatg+ XP_010102010.1 4 LPPGFRFYPTEEELVSFYLLNKLEGKREEINRVINVIDIYGIEPWDLPKysgeLCRGDTEQWFFFTPRQEREARGGRPNRTTASGYWKATGSPGY 98 79**************************999***********645654444777******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s +++++g+kkt+vfykg+ap+g+kt+W m+eyr+ XP_010102010.1 99 VYSPDSKVIGVKKTMVFYKGKAPTGRKTKWKMNEYRA 135 *********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-50	2	159	IPR003441	NAC domain
PROSITE profile	PS51005	50.798	4	161	IPR003441	NAC domain
Pfam	PF02365	5.2E-25	5	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MQELPPGFRF YPTEEELVSF YLLNKLEGKR EEINRVINVI DIYGIEPWDL PKYSGELCRG 60 DTEQWFFFTP RQEREARGGR PNRTTASGYW KATGSPGYVY SPDSKVIGVK KTMVFYKGKA 120 PTGRKTKWKM NEYRAIEAAN PDGATTPKLR HEFSLCRVYV ISGSFRAFDR RPLEVTGDPQ 180 HQGDRAGPSA QNTTMVEKAG SSSETSSSGD LADPPGASGS NTDWEMNDDL EQTFLELDEL 240 QWP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-38	4	159	17	163	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-38	4	159	17	163	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-38	4	159	17	163	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-38	4	159	17	163	NO APICAL MERISTEM PROTEIN
3swm_A	2e-38	4	159	20	166	NAC domain-containing protein 19
3swm_B	2e-38	4	159	20	166	NAC domain-containing protein 19
3swm_C	2e-38	4	159	20	166	NAC domain-containing protein 19
3swm_D	2e-38	4	159	20	166	NAC domain-containing protein 19
3swp_A	2e-38	4	159	20	166	NAC domain-containing protein 19
3swp_B	2e-38	4	159	20	166	NAC domain-containing protein 19
3swp_C	2e-38	4	159	20	166	NAC domain-containing protein 19
3swp_D	2e-38	4	159	20	166	NAC domain-containing protein 19
4dul_A	2e-38	4	159	17	163	NAC domain-containing protein 19
4dul_B	2e-38	4	159	17	163	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010102010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010102010.1	0.0	NAC domain-containing protein 90
Swissprot	Q9FMR3	5e-85	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	W9RGY6	0.0	W9RGY6_9ROSA; NAC domain-containing protein 90
STRING	XP_010102010.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	2e-86	NAC domain containing protein 61

Link Out ? help Back to Top
Entrez Gene	21399352

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]