PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010102121.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family WRKY
Protein Properties Length: 258aa    MW: 27828.8 Da    PI: 5.2073
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010102121.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.34.4e-3071129259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp++++itY  +Hnh+
  XP_010102121.1  71 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTTLIITYACNHNHP 129
                     69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-3162131IPR003657WRKY domain
SuperFamilySSF1182901.44E-2566131IPR003657WRKY domain
SMARTSM007742.4E-3470130IPR003657WRKY domain
PROSITE profilePS5081132.08771131IPR003657WRKY domain
PfamPF031066.0E-2572129IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDRRFSSADT EEYAEPVSEN GPDSPSSGDD MTKTAKPSPK KSKRGVQKRV VSVPIGDVEG  60
SKSKGEAYPP SDSWAWRKYG QKPIKGSPYP RGYYRCSSSK GCPARKQVER SRVDPTTLII  120
TYACNHNHPV PTKSHSSTSA PASATSAAMI SDEVLAKTPA EIVVFSGESD IEIGDALLDG  180
YHHQWFDDVA STAVLESPIY GGAYVDADVS TAFSAVSGED ESLFADLGEL PECSVVFRRR  240
IVEPEEQNRR CGLSAVTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-2048132680Disease resistance protein RRS1
5w3x_D1e-2048132680Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010102121.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9833331e-100HG983333.1 Humulus lupulus mRNA for WRKY transcription factor (Wrky3 gene), clone 3323.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102121.10.0probable WRKY transcription factor 69
SwissprotQ93WV55e-78WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBLW9RQF60.0W9RQF6_9ROSA; Putative WRKY transcription factor 69
STRINGXP_010102121.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.14e-73WRKY DNA-binding protein 69
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]