PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010102236.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 280aa    MW: 31429.7 Da    PI: 9.518
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010102236.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.2e-171360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+  ++q+G g+W++ ++  g+ R++k+c++rw +yl
   XP_010102236.1 13 KGPWTPEEDHILISFIQQYGHGNWRALPKQAGLLRCGKSCRLRWINYL 60
                     79******************************99************97 PP
2Myb_DNA-binding538.1e-1766111148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++++E+e + +++++lG++ W++Ia++++ gRt++++k++w+++l
   XP_010102236.1  66 RGSFSKDEEETITKLHQLLGNR-WSAIAAKLP-GRTDNEIKNFWHTHL 111
                      899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-26463IPR009057Homeodomain-like
PROSITE profilePS5129417.328860IPR017930Myb domain
SuperFamilySSF466892.52E-309107IPR009057Homeodomain-like
SMARTSM007172.2E-131262IPR001005SANT/Myb domain
PfamPF002493.4E-161360IPR001005SANT/Myb domain
CDDcd001673.94E-111560No hitNo description
PROSITE profilePS5129425.43361115IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-2664115IPR009057Homeodomain-like
SMARTSM007173.1E-1665113IPR001005SANT/Myb domain
PfamPF002493.1E-1566111IPR001005SANT/Myb domain
CDDcd001679.33E-1268111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MRTPCCEKMG LKKGPWTPEE DHILISFIQQ YGHGNWRALP KQAGLLRCGK SCRLRWINYL  60
RPDIKRGSFS KDEEETITKL HQLLGNRWSA IAAKLPGRTD NEIKNFWHTH LKKKLQRSSC  120
SAATNTTPIM NSDTIYKHYS NGLLLSKYAN IPMNSTTVQT MTQNISPDHH AMVVAPAVIQ  180
SLAISHADQH SAASSTAEMQ PTKDHATWSA SDVITRSLTD GKLSAIKSLS AMARYPTDDQ  240
SHLAHTMKEN DNDIGGKKIN EDIDFWYNLF VKSGEPSRPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-28111155108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010102236.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102236.10.0transcription factor MYB4
TrEMBLW9RQQ50.0W9RQQ5_9ROSA; Myb-related protein Myb4
STRINGXP_010102236.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.14e-73myb domain protein 15