PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010102319.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 383aa    MW: 43968.6 Da    PI: 7.1226
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010102319.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.1e-05220239120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  n++ H+
  XP_010102319.1 220 FSCPLCFKTFNRYNNMQMHM 239
                     89*****************9 PP
2zf-C2H214.10.00013304326123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk F  + + ++H +++
  XP_010102319.1 304 FMCRKCGKAFAVRGDWRTHEKNC 326
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66220247IPR007087Zinc finger, C2H2
SMARTSM003550.61220242IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.3E-5220239IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280222242IPR007087Zinc finger, C2H2
SuperFamilySSF576672.31E-6287324No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5300324IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808304324IPR007087Zinc finger, C2H2
SMARTSM0035549304324IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MTDHPYSNNH LNGWLNLNPV HHDQYHQYHH HYFSSSSTSN FNPIFPSYHN YYNNNIYNNN  60
NNNNNYIIRP PSPPLKEALP LLSLSPTRYH HHHHDHRDQD HDGQESSSFN NIVEIMDDDH  120
HKICKEIKDQ EEVVISSSIT TGDHDHEETV TVALHLGLPS PSSASADLIS RLSSTEISDK  180
EAEDHNLSSV TSSGYNSNSL NKGQYWIPTP AQILIGPTQF SCPLCFKTFN RYNNMQMHMW  240
GHGSQYRKGP ESLRGTQPTA MLRLPCFCCA PGCRNNIDHP RSRPLKDFRT LQTHYKRKHG  300
IKPFMCRKCG KAFAVRGDWR THEKNCGKLW YCSCGSDFKH KRSLKDHIKA FGNGHAAYGV  360
DCFDHEDDEA ASEIEQDHHI IDS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010102319.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3264411e-119AY326441.1 Morus indica clone MUL 32A microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102319.10.0zinc finger protein WIP5
SwissprotQ9SVY11e-128ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLW9RHU20.0W9RHU2_9ROSA; Protein TRANSPARENT TESTA 1
STRINGXP_010102319.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-127C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]