PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010102458.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

Protein Properties

Length: 122aa MW: 14299.3 Da PI: 9.1184

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010102458.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.4	1.6e-10	7	104	3	97
EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.....TTHHHHHHHHT--TT-EEEEEE-SS. CS B3 3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvlt.....kGWkeFvkangLkegDfvvFkldgr. 87 k+l+p dv + + +p + + + + + ++ ++++de+g + ++ l + ++ +++l+ +GW +Fv++ +L+eg++v F + XP_010102458.1 7 KTLSPDDVKDK--FHVPSNWVGTLfpnlE--QDSELPIQVRDETGSERRFVL--KTRR-GVYLKtvfqrRGWHKFVRDLDLREGETVYFWKEAVg 94 55655555544..6889999877789544..4455569************..4444.4344445556******************844433 PP SEE..EEEEE CS B3 88 sefelvvkvf 97 + ++v+v+ XP_010102458.1 95 GRDIMRVQVR 104 4444566665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd10017	5.57E-10	4	105	No hit	No description
SuperFamily	SSF101936	4.71E-13	4	95	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.0E-14	6	99	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	2.7E-7	12	104	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MASCYGKTLS PDDVKDKFHV PSNWVGTLFP NLEQDSELPI QVRDETGSER RFVLKTRRGV 60 YLKTVFQRRG WHKFVRDLDL REGETVYFWK EAVGGRDIMR VQVRDEPQFV RVFGVPLVVP 120 NE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010102458.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	W9RTT9	4e-84	W9RTT9_9ROSA; Uncharacterized protein
STRING	XP_010102458.1	6e-85	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17870	2	4

Link Out ? help Back to Top
Entrez Gene	21390383