PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010102460.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family B3
Protein Properties Length: 119aa    MW: 13827.8 Da    PI: 9.8265
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010102460.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.73.2e-114100194
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                     f k l  s++ +++ l++p + + +   +++++++ t+++  ++g ++ + l+ r+++    ++ + GW +Fv+a +L++ D+v F  ++r +e 
  XP_010102460.1   4 FSKSL--SHSDRTQKLSIPIDWLGSLlpSIEQNSEATISVVERNGAEYCFVLRTRNRPHLkpVFQSHGWLQFVRARQLQVDDTVYFWKERRgNED 96 
                     67888..66666777********999*966677889****************876666557688889*******************966654555 PP

                     ..EE CS
              B3  91 elvv 94 
                        v
  XP_010102460.1  97 IIGV 100
                     4445 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.0E-14396IPR015300DNA-binding pseudobarrel domain
CDDcd100173.21E-11395No hitNo description
SuperFamilySSF1019365.69E-12394IPR015300DNA-binding pseudobarrel domain
PfamPF023624.8E-8494IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MTLFSKSLSH SDRTQKLSIP IDWLGSLLPS IEQNSEATIS VVERNGAEYC FVLRTRNRPH  60
LKPVFQSHGW LQFVRARQLQ VDDTVYFWKE RRGNEDIIGV QVRDRPNITF LMGHAIAFN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010102460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW9RIL26e-84W9RIL2_9ROSA; Uncharacterized protein
STRINGXP_010102460.19e-85(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1787024