PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010102543.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C3H
Protein Properties Length: 297aa    MW: 31036.5 Da    PI: 10.1863
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010102543.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.33e-09101126227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt++C+ f     Ck+Gd+C+FaHg+
  XP_010102543.1 101 KTRICSKFNTAEGCKFGDKCHFAHGE 126
                     8***********************96 PP
2zf-CCCH38.42.1e-12264288126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+lC++fa+ GtC +G+rC+FaHg
  XP_010102543.1 264 YKTKLCDNFAK-GTCTFGGRCHFAHG 288
                     9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.0513462IPR000571Zinc finger, CCCH-type
SMARTSM003563.33461IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-63560IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-73659IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-898130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-1498131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.55499127IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-499126IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-6101126IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.9E-14160244IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.109.4E-15169239IPR004088K Homology domain, type 1
SMARTSM003227.7E-11170240IPR004087K Homology domain
PROSITE profilePS5008413.858171235IPR004088K Homology domain, type 1
CDDcd001052.93E-13173235No hitNo description
PfamPF000132.9E-11173236IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.108.1E-16259294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.892263290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-8263294IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7263289IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-10264288IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDVRKRGRPE SGFKANGGVK KSKRELESLS TGVGSKSKPC TKFFSTTGCP FGEGCHFLHY  60
VPGGYNAVAQ MMNLAPAVPP ASRNAPAAAP VANGSSAPAV KTRICSKFNT AEGCKFGDKC  120
HFAHGEWELG KPVAPSHDDP RAMAPLPGRF TGRVEPPPLP PPGPASGFGA SATAKISVDA  180
SLAGAIIGKG GVNSKQICRQ TGVKLAIREH ELDPNLKNIE LEGTFEQINA ASARVRELIF  240
NISMTARAKP SGVTGGPAPP GNNYKTKLCD NFAKGTCTFG GRCHFAHGAA ELRKTVV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010102543.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102543.10.0zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-112C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLW9RU730.0W9RU73_9ROSA; Zinc finger CCCH domain-containing protein 14
STRINGXP_010102543.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-62C3H family protein