PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010102753.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB_related
Protein Properties Length: 251aa    MW: 27672.2 Da    PI: 10.6308
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010102753.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding353.4e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G g W+tI            R+  ++k++w++
   XP_010102753.1  5 KQKWTAEEEAALKAGVVKHGAGKWRTILTDPEfssilHLRSNVDLKDKWRN 55
                     79***********************************88***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.127161IPR017930Myb domain
SuperFamilySSF466893.74E-15267IPR009057Homeodomain-like
SMARTSM007173.1E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-12456IPR009057Homeodomain-like
PfamPF002491.4E-7555IPR001005SANT/Myb domain
CDDcd116601.24E-17657No hitNo description
Gene3DG3DSA:1.10.10.102.1E-17116190IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.5E-14116181IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467858.71E-18116195IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150426.034118186IPR005818Linker histone H1/H5, domain H15
PfamPF005385.5E-11123179IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV VKHGAGKWRT ILTDPEFSSI LHLRSNVDLK DKWRNINVTA  60
IWGSRQKAKL ALKKNQPAPK QDNSPLAVVT VHNDEEIVDA KPLAIEGGTL QITNPKEPNA  120
RLDKLILDAI AKLKEPRGSD RAAIAMYIEA NYWAPPNLKK LLSTKLKHMT LNGKLIKVKH  180
RYRIAPSSKG AEKRRSSAML LLEAMKKDSP RVEKTEVNIL TKSQVDAELT KMRGMTPQEA  240
AAAAAQAVAE A
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00626PBMTransfer from PK06103.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010102753.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102753.10.0telomere repeat-binding factor 2
RefseqXP_024025472.10.0telomere repeat-binding factor 2
SwissprotQ8VWK43e-79TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLW9RUN71e-180W9RUN7_9ROSA; Histone H1
STRINGXP_010102753.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.33e-81telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]