PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010102909.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 336aa    MW: 38721.6 Da    PI: 7.3181
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010102909.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.4e-18754148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd  l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
   XP_010102909.1  7 RGPWTVEEDRTLINYIANHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 54
                     89********************************************97 PP
2Myb_DNA-binding51.22.9e-1660103146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_010102909.1  60 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 103
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.248258IPR017930Myb domain
SuperFamilySSF466897.49E-314101IPR009057Homeodomain-like
SMARTSM007171.2E-15656IPR001005SANT/Myb domain
PfamPF002499.6E-17754IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-23861IPR009057Homeodomain-like
CDDcd001674.21E-12954No hitNo description
PROSITE profilePS5129418.70759109IPR017930Myb domain
SMARTSM007171.3E-1459107IPR001005SANT/Myb domain
PfamPF002495.8E-1560103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-2362108IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009620Biological Processresponse to fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MMMDLRRGPW TVEEDRTLIN YIANHGEGRW NSLARCAGLK RTGKSCRLRW LNYLRPDVRR  60
GNITLEEQLL ILELHSRWGN RWSKIAQHLP GRTDNEIKNY WRTRVQKHAK QLKCDVNSKQ  120
FKDTMRYLWM PRLVERIQAA NTAAATTTAN ITVSAGAPST HHHQFNNFHN NNMINNNLPI  180
SNIINISNDF VGSANYTPEN SSTAASSDSF GAQFSPVSDL TDHYFTANNN PTATTTTLPV  240
NNNSNTTTTT TNPHDHHQYF QAAPSTTHDH HQQVGGTYYY HPSMSTTYDQ NNMSFSHEGL  300
NIDDRFQASM DQNNQYWIEE VDNLWNNVDQ DMWFLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-25410124120MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00334DAPTransfer from AT3G06490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010102909.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102909.20.0transcription factor MYB108
TrEMBLW9RJC40.0W9RJC4_9ROSA; Myb-related protein 305
STRINGXP_010102909.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.18e-88myb domain protein 108