PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010103038.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family LBD
Protein Properties Length: 129aa    MW: 14329.6 Da    PI: 8.5037
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010103038.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260109.62.3e-3451061101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +CaaCk  r kC+++C+++p fp+++p++fa+vh+++Ga+nv k+l+alp ++ r +a++++++eA++r++ PvyG+ g++++l+qq++ ++++l
  XP_010103038.1   5 RCAACKNSRSKCPPNCIFSPFFPSNNPQRFACVHRIYGAKNVKKMLQALPSHDlRAQAAECMCFEAQCRIESPVYGCGGIVSQLHQQIHFAETQL 99 
                     6*************************************************9999***************************************** PP

          DUF260  95 allkeel 101
                     a++++++
  XP_010103038.1 100 AKTRAQI 106
                     **99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.784106IPR004883Lateral organ boundaries, LOB
PfamPF031954.3E-335103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MISGRCAACK NSRSKCPPNC IFSPFFPSNN PQRFACVHRI YGAKNVKKML QALPSHDLRA  60
QAAECMCFEA QCRIESPVYG CGGIVSQLHQ QIHFAETQLA KTRAQIKALI ISNVVQEEES  120
QLLHDQPLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-28610612111LOB family transfactor Ramosa2.1
5ly0_B3e-28610612111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010103038.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022985104.11e-53LOB domain-containing protein 24-like
SwissprotP594683e-42LBD24_ARATH; LOB domain-containing protein 24
TrEMBLW9S9302e-90W9S930_9ROSA; Uncharacterized protein
STRINGXP_010103038.13e-91(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36973066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.11e-44LOB domain-containing protein 24