PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010103343.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HD-ZIP
Protein Properties Length: 205aa    MW: 23523.6 Da    PI: 8.9208
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010103343.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.31.5e-194092456
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    + ++t++ql+ Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k
  XP_010103343.1 40 KKRLTSDQLDSLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWK 92
                    5679************************************************9 PP
2HD-ZIP_I/II119.61.7e-3839129292
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     kk+rl+++q+ +LE+sF+ee kL+p+rK++l+reLglqprq+avWFqnrRAR+k+kq+E+ y++Lk+++da+++e+++L++ev +L++ l+
  XP_010103343.1  39 KKKRLTSDQLDSLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQVERLYDTLKQEFDAISKEKQKLQDEVMKLKAMLR 129
                     9**************************************************************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.02E-192495IPR009057Homeodomain-like
PROSITE profilePS5007116.9083494IPR001356Homeobox domain
SMARTSM003891.4E-173798IPR001356Homeobox domain
CDDcd000861.32E-153995No hitNo description
PfamPF000466.2E-173992IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-204493IPR009057Homeodomain-like
PRINTSPR000313.4E-56574IPR000047Helix-turn-helix motif
PROSITE patternPS0002706992IPR017970Homeobox, conserved site
PRINTSPR000313.4E-57490IPR000047Helix-turn-helix motif
PfamPF021831.2E-894128IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MEMKHQGMLS EAVSQGLVPG MEMKNNINNS IISSSYGDKK KRLTSDQLDS LERSFQEEIK  60
LDPDRKMKLS RELGLQPRQI AVWFQNRRAR WKAKQVERLY DTLKQEFDAI SKEKQKLQDE  120
VMKLKAMLRD QITWKQVSTG GYTEISGGEE TVESTSGAIR SSSIKSQGTN QHQMAADQCN  180
NIFTMEEYNP VSPPTNYWGH LPSYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18694RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010103343.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010103343.11e-153putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR02e-54ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLW9S9Y31e-152W9S9Y3_9ROSA; Putative homeobox-leucine zipper protein ATHB-51
STRINGXP_010103343.11e-152(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.13e-56homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]