PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010103346.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family Trihelix
Protein Properties Length: 473aa    MW: 53884.2 Da    PI: 6.3018
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010103346.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.91.6e-24107207186
        trihelix   1 rWtkqevlaLiearremeerlr.rgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 
                     +Wt+++v+ Li a+ +++++ + +g              +kk++W+ vs++m+e+gf++sp+qC++k+++lnkryk+++++ +k+ +++++++ +
  XP_010103346.1 107 KWTDSMVRYLIMAVYYIGDDGGlEGTdpaakkkpsggllQKKGKWKTVSRAMMEKGFHVSPQQCEDKFNDLNKRYKRVNDILGKGtSCRVVENQS 201
                     7**************999999953335566778899999**********************************************669******* PP

        trihelix  81 yfdqle 86 
                     ++d+++
  XP_010103346.1 202 LLDSMD 207
                     ***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-21105232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MEANGLGGGG LFSAMGSGML GLEMPLQPQQ QNPRHLQHPQ MVGYAHHDPA DQHPQTQPSL  60
KHGYTYGPTS KSKQVALSDE DEAGFGADHD GTNGDGKRKM SPWQRMKWTD SMVRYLIMAV  120
YYIGDDGGLE GTDPAAKKKP SGGLLQKKGK WKTVSRAMME KGFHVSPQQC EDKFNDLNKR  180
YKRVNDILGK GTSCRVVENQ SLLDSMDLTP KMKEEVRKLL NSKHLFFREM CAYHNGGAHQ  240
SPELVFEPSN IHPNQQPYPQ PCFHLKESAQ MVGRQDTEAL KMIKTGSAGE DEEEDDEDDD  300
SDEYDEADED EEADGGSRGQ IGRGHDHDDE DNCERQPAKR PRKEALSGTT QLIQHFRSEI  360
LGVVQDGLRS PWEKKQWLKV RMLQLEEQQV SYQCEAFELE KQRLKWIKFS SKKEREMEKA  420
KFENERRKLE NERMVLIIRQ KELELLDLHH RQNQQQQHSS NKRGGGDPSS ITA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010103346.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010103346.10.0uncharacterized protein LOC21385857
TrEMBLW9RKH80.0W9RKH8_9ROSA; Uncharacterized protein
STRINGXP_010103346.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.12e-75sequence-specific DNA binding transcription factors