PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010103388.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

C2H2

Protein Properties

Length: 173aa MW: 19343.8 Da PI: 9.9335

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010103388.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	45	67	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C ++F ++ L H++ H XP_010103388.1 45 FKCQFCRRVFANSQALGGHQNAH 67 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.43E-6	41	72	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.1E-4	41	71	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.552	45	72	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	47	67	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MSDHRNPSSS LKLFGFPITE NGEVVVPSTE QRAERTSWEM ENRKFKCQFC RRVFANSQAL 60 GGHQNAHKRE RQRVSAQFQG RPVVGPVLSP HAVRSSAATS IYASRFAANY CNSNGIINGN 120 YNNPSSQEVL PTYRTFPSQY YNCLVSRPVL LQQELATKPE VGVDLHLKLS LSG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010103388.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010103388.1	1e-127	zinc finger protein 5
TrEMBL	W9RTV7	1e-126	W9RTV7_9ROSA; Zinc finger protein 6
STRING	XP_010103388.1	1e-126	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3903	24	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06650.1	6e-12	C2H2 family protein

Link Out ? help Back to Top
Entrez Gene	21390855