PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010103791.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C3H
Protein Properties Length: 712aa    MW: 78427.4 Da    PI: 5.3315
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010103791.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.9e-08126148427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     ++C ff++ G+C  GdrC F+Hgp
  XP_010103791.1 126 VPCIFFQK-GYCLKGDRCAFSHGP 148
                     69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.1172554IPR000571Zinc finger, CCCH-type
SMARTSM003560.00272653IPR000571Zinc finger, CCCH-type
PfamPF156632.4E-112680No hitNo description
PROSITE profilePS5010311.1785682IPR000571Zinc finger, CCCH-type
SMARTSM003560.125881IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5119148IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6122148IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.45122149IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-6123147IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-5126148IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MVAGAQQQPQ PQQQQPPLSA EEEALKRNTD CVYFLASPLT CKKGGECEYR HSEYARVNPR  60
DCWYWLNGNC LNPKCAFRHP PLDGLLGTQA APSAGSALPS SQATAVSVTT AASVPPATNN  120
SSKQAVPCIF FQKGYCLKGD RCAFSHGPNP TTSTKVSQAS AVTHGSEPSN VKKAFGGLQK  180
CTQEQMFPLA SISKPVGVAP EANHVPKVEN APPRNGVSIE RSVPSSKSFD NEALRSKAVS  240
ALVMNGISTT RSNRSHQVNV SDDHGFQNGK DADEFLRESS PGFDVLVDDE LRDPDYFHGE  300
DQYGRARGLD GRNLSSVDEY DMDQSAGYGS ANPHGYDSYD HMQGQYAWEQ HRASSERTVG  360
GAAQFERTGY RKSHSPDNID ESDLRYRLSK QRRVNGLRSV ISHEHAHDTH VDERNYRGSS  420
RRDSHQMLQH EGPLSSRLRG RIKLPGGSSV NGGDLRHDRE FDRGRSRGRL SPSRPQSSIH  480
QGRLRDRLKG KVQEDYNSEG RIFRGFPPGR EATDEGTDFA APKKLSELKV GKVTENKEHS  540
HLGKRKSTRM EVSQPPEGDR SFEGPKPLSE ILKRKREAEA AGSGSAKSIS EARRVSSSLA  600
KEEGNSSVFS NKEESKSATI DVVGTEDEKI EGPDSHAPDA NDLEVEDGMI YDETVDDQEL  660
EAEDQTHGEY DFEQGEEEGE YDGENAEEGE EEYLEDEDGD DDFAKKIGVM FS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010103791.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819046e-40LN681904.1 Cucumis melo genomic scaffold, anchoredscaffold00053.
GenBankLN7132646e-40LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010103791.10.0zinc finger CCCH domain-containing protein 17
RefseqXP_024026128.10.0zinc finger CCCH domain-containing protein 17
TrEMBLW9RM470.0W9RM47_9ROSA; Zinc finger CCCH domain-containing protein 17
STRINGXP_010103791.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92273137