PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010104109.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

C2H2

Protein Properties

Length: 554aa MW: 60894.6 Da PI: 9.3032

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010104109.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.4e-05	59	81	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_010104109.1 59 FICEICNKGFQRDQNLQLHRRGH 81 89*******************88 PP
2	zf-C2H2	11.7	0.00079	136	158	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + XP_010104109.1 136 WKCEKCSKKYAVQSDWKAHSKIC 158 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.27E-7	58	81	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.5E-5	58	81	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	6.8E-5	59	81	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.845	59	81	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.022	59	81	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	61	81	IPR007087	Zinc finger, C2H2
SMART	SM00355	78	101	131	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.0E-5	124	157	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.27E-7	131	156	No hit	No description
SMART	SM00355	140	136	156	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence Send to blast
MGFPTSEGFL KSPQIQTLTL TQTHLQPIRR REAYLETQAN PDAEVVALSP KSLMATNRFI 60 CEICNKGFQR DQNLQLHRRG HNLPWKLRQR SNKDVIRKKV YVCPEKSCVH HDPSRALGDL 120 TGIKKHYSRK HGEKKWKCEK CSKKYAVQSD WKAHSKICGT REYKCDCGTL FSRKDSFITH 180 RAFCDALAEE NARFGAVTTP NIPNFININH NSNNNPQAAA ARIMPHLSPI FPPDFAAESP 240 NNFGNATSDH GQIRPRVPLW LDSANSHHHQ QLNSNAFMAG NSTGLLPQHD LLQGAATVNL 300 FGQPSSTTPW LNNNSGQLAM SSSSSMLPRG LLKEEDEESK GINGANNNGV SETMSSLQHP 360 SIQNLQQSPA HMSATALLQK AAQMGSTRSS CSAFNGSAFG LMSSSSNNNN SATNNSFSSQ 420 NKLFVRSSQL PNQTSTTTDS FNDLVNSQTA TNINVADHHH QAAAGGQVMT RSSSSMFLGN 480 SKSNLDQLNM ANNMKQSQSN TNENEHSLTR DFLGVGSDHH HHHHGSGSFF QQELAKFASM 540 GSAMNLSQYS AGNH

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence Send to blast

MGFPTSEGFL KSPQIQTLTL TQTHLQPIRR REAYLETQAN PDAEVVALSP KSLMATNRFI  60
CEICNKGFQR DQNLQLHRRG HNLPWKLRQR SNKDVIRKKV YVCPEKSCVH HDPSRALGDL  120
TGIKKHYSRK HGEKKWKCEK CSKKYAVQSD WKAHSKICGT REYKCDCGTL FSRKDSFITH  180
RAFCDALAEE NARFGAVTTP NIPNFININH NSNNNPQAAA ARIMPHLSPI FPPDFAAESP  240
NNFGNATSDH GQIRPRVPLW LDSANSHHHQ QLNSNAFMAG NSTGLLPQHD LLQGAATVNL  300
FGQPSSTTPW LNNNSGQLAM SSSSSMLPRG LLKEEDEESK GINGANNNGV SETMSSLQHP  360
SIQNLQQSPA HMSATALLQK AAQMGSTRSS CSAFNGSAFG LMSSSSNNNN SATNNSFSSQ  420
NKLFVRSSQL PNQTSTTTDS FNDLVNSQTA TNINVADHHH QAAAGGQVMT RSSSSMFLGN  480
SKSNLDQLNM ANNMKQSQSN TNENEHSLTR DFLGVGSDHH HHHHGSGSFF QQELAKFASM  540
GSAMNLSQYS AGNH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-35	132	201	3	72	Zinc finger protein JACKDAW
5b3h_F	1e-35	132	201	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	98	KLRQRSNKDVIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010104109.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024026361.1	0.0	protein indeterminate-domain 9
Swissprot	Q944L3	1e-109	IDD9_ARATH; Zinc finger protein BALDIBIS
TrEMBL	W9RMN7	0.0	W9RMN7_9ROSA; Zinc finger protein MAGPIE
STRING	XP_010104109.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-93	indeterminate(ID)-domain 2

Link Out ? help Back to Top
Entrez Gene	21397535

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]