PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010104118.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family ARF
Protein Properties Length: 812aa    MW: 89675.9 Da    PI: 6.9705
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010104118.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.94.5e-24177278199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      + + + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F   + ++
  XP_010104118.1 177 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QRRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSVFVNQKNLVSGDAVLFL--RGEN 268
                     99****************************853.3345679************************************************..4499 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+++++r+
  XP_010104118.1 269 GELRLGIRRA 278
                     999****996 PP
2Auxin_resp1171.6e-38303384182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     +a+a+stks+F+v+Y+Pra+++eFv++++k++k++++ v+vG+Rfk +fe+eds+err+sG+v+g+ dldp+rW+nSkWr+L
  XP_010104118.1 303 VANAVSTKSMFHVFYSPRATHAEFVIPYQKYVKSITNLVTVGTRFKTRFEMEDSPERRCSGVVTGICDLDPYRWTNSKWRCL 384
                     689******************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.72E-44170287IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-40171286IPR015300DNA-binding pseudobarrel domain
CDDcd100174.75E-23175277No hitNo description
PfamPF023623.4E-22177278IPR003340B3 DNA binding domain
PROSITE profilePS5086313.098177279IPR003340B3 DNA binding domain
SMARTSM010197.0E-25177279IPR003340B3 DNA binding domain
PfamPF065072.8E-32303384IPR010525Auxin response factor
PfamPF023091.2E-5681771IPR033389AUX/IAA domain
SuperFamilySSF542774.9E-9687766No hitNo description
PROSITE profilePS5174521.072687769IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
MEIDLNHVVV SEVENNNNNN NNNNGSYCNG DCDNKSSCSV CCLSSSTSSC SSNSSSAPVS  60
SSIYLELWHA CAGPLTSLPK KGNVVVYFPQ GHLEQLSLSS PFSPMEIPTF DLQPQIFCKV  120
VNVQLLANKE NDEVYTHVTL LPQPELVGMK LEGKELEELG GDEGVGGPPT KSTPHMFCKT  180
LTASDTSTHG GFSVPRRAAE DCFPPLDYKQ RRPSQELVAK DLHGVEWRFR HIYRGQPRRH  240
LLTTGWSVFV NQKNLVSGDA VLFLRGENGE LRLGIRRAIR PRNGLPDTIV RNQNSYPNVL  300
SLVANAVSTK SMFHVFYSPR ATHAEFVIPY QKYVKSITNL VTVGTRFKTR FEMEDSPERR  360
CSGVVTGICD LDPYRWTNSK WRCLMVRWDE DIGNSHQERV SPWEIDPSVS LPPLSFQSSP  420
RLKKMRTSLQ ATPPSNPITA GGGGFLDFEE SVRSSKVLQG QENIGFISPL YGCDIVNRPL  480
DFDMQPPAHQ NLASSTTKKA TMNELLRAQP TTYAGFVESS RFPKVLQGQE ICQLRSLTGK  540
TNINLGAWAK PSLGCTSFSN YQAAAKPNFF PLASESLQNT YFPYGDIHRV GPSPCATLSN  600
AANFPRESVN INPYSIQSGI LRNEVGKPNV PNEFKPQENI SAHPTLGANI KSPKDDNFGG  660
TVTGCKLFGF SLTGETTTPN SQSSSKRSCT KVHKQGSLVG RAIDLSRLSG YGDLQSELEW  720
LFNMEGLLKD PDKGWRILYT DSENDVMVVG DDPWHEFCDV VSKIHIYTRE EVEKMTIGGM  780
NSDDTQSCLE QAPVSKSSSV GQPDSSPTVI RV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-121494072354Auxin response factor 1
4ldw_A1e-121494072354Auxin response factor 1
4ldw_B1e-121494072354Auxin response factor 1
4ldx_A1e-121494072354Auxin response factor 1
4ldx_B1e-121494072354Auxin response factor 1
4ldy_A1e-121494072354Auxin response factor 1
4ldy_B1e-121494072354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010104118.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104118.10.0auxin response factor 4 isoform X1
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLW9RYJ10.0W9RYJ1_9ROSA; Auxin response factor
STRINGXP_010104118.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52363252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]